Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01816 ATGGAAGAAATAGGTCCAAGACCATCATCGTTAGAGAAGAAAGCAAAACCGCAAGAGCAATTGAATTGTCCAAGGTGCAGTTCAACGAACACAAAGTTCTGCTATTACAACAATTACAGCCTCACACAGCCAAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGTGGTTCTCTCAGAAACGTCCCCGTTGGAGGTGGCTCCAGGAAGAACAAGAAGGCCACCTCATCAAAGGTTCCTGATTTGAATCCACCAAGCCTCTCTTCAGTCTCCGCTATTTCTTCCCAAAACCCTAAAATGCAAGGAGTCCATGACCTTAATTTGGCTTTTCCTATGGACAAGTATCATGGCATGTCCCAATATGTTGAGATGCCAAAACTTGAAATTGGTGGTGACAATACTAGTCACCACCATAGCCCTTCTTCTGCTCCAACTTCTCTTTCACCAACATATGGCATGTTGCCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTCATGCCAAGCTCAGATTCACTTTACACACCGATCTACCCCATGCAAGAAATTAAACCAAACCTTAGCTTTTCGGTTGATGGGTTTGGAAATAGATCACACGGCGGGGTTCAAGAGAACGGTGGCGGCGGCAGGCTTTTGTTCCCTTTCGGAGACATCAAGCACCTTTCTGCAGGTGTTGAAGTTGAACACAATAAAGAACAAGGAAATAATCCAACTGGATACTGGTCTGGAATCATCGGAGAAGGTTCATCATGGTAA 762 0.4449 MEEIGPRPSSLEKKAKPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKATSSKVPDLNPPSLSSVSAISSQNPKMQGVHDLNLAFPMDKYHGMSQYVEMPKLEIGGDNTSHHHSPSSAPTSLSPTYGMLPRGLNPYAPNSFMPSSDSLYTPIYPMQEIKPNLSFSVDGFGNRSHGGVQENGGGGRLLFPFGDIKHLSAGVEVEHNKEQGNNPTGYWSGIIGEGSSW 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01816 253 MobiDBLite consensus disorder prediction 130 149 - -
Viun6g01816 253 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Viun6g01816 253 MobiDBLite consensus disorder prediction 72 95 - -
Viun6g01816 253 MobiDBLite consensus disorder prediction 232 253 - -
Viun6g01816 253 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Viun6g01816 253 MobiDBLite consensus disorder prediction 1 22 - -
Viun6g01816 253 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Viun6g01816 253 MobiDBLite consensus disorder prediction 62 95 - -
Viun6g01816 253 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 116 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01816 Viun-Chr6 25348174 25350019 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01816 13 253 C2C2-Dof Transcription Factor Family AT3G61850 47.426 7.36e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun6g01816 zf-Dof 3.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01816 - - gmx:100775598 382.489