Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00096 ATGGAGAGTGGATTGAAGGGTGAGGTTGAGATATCACCAAATTGTCCAAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCGAGGTACTTTTGCAAAGGTTGCAGAAGATACTGGACCAAAGGAGGGTCTCTGCGAAATGTTCCTGTTGGTGGTGGCTGTAGGAAGAACATAAGAGGTAACAAGAATTTGTTAAGACAATCCATTGATGGTTTCACTTTCAAAACTTCATCATCACCTTCTGCCAATGCCACAGATCATAATAACAACAACCATGTTGAGCATTCTTATGATCCCAGAATAAGAACTTCTGCAATTTCTGGTTCCTTAGTGGTCAATGATGGTCCAATTGATCTTGCACTAGTTTATGCAAATTTCCTCAACCAAAAACCCAGTTCTGAATCTAGGATTGAGAGCAGTAACTTAGATCAAATTCCAACAGCTTTTAATCCTTCTCTTGAGAATAATTCAAGGCTATCAAACACAGATGTTATTGGGTATTTTAATCTTCCAGAACAAACATCCACACCAGGACTTTACATTGAATTCATTTACTGCCACTACTCTTTCTCTGATCTAAACCAATAG 612 0.3889 MESGLKGEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNIRGNKNLLRQSIDGFTFKTSSSPSANATDHNNNNHVEHSYDPRIRTSAISGSLVVNDGPIDLALVYANFLNQKPSSESRIESSNLDQIPTAFNPSLENNSRLSNTDVIGYFNLPEQTSTPGLYIEFIYCHYSFSDLNQ 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00096 203 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
Viun6g00096 203 Pfam Dof domain, zinc finger 14 65 IPR003851 GO:0003677|GO:0006355
Viun6g00096 203 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 152 IPR045174 GO:0003700|GO:0006355
Viun6g00096 203 MobiDBLite consensus disorder prediction 84 104 - -
Viun6g00096 203 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Viun6g00096 203 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00096 Viun-Chr6 1736395 1737006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00096 9 157 C2C2-Dof Transcription Factor Family AT3G52440 54.362 8.88e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun6g00096 zf-Dof 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00096 - - var:108323731 300.441