Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03812 ATGCAGGATCCGGCGTTGTTCCAGCCCTTGAAACCCCACTTTCCCGAACAAGAGCAGCTTAAGTGTCCGCGTTGTGATTCCGTCAACACCAAGTTTTGTTACTACAACAACTACAACCTCTCGCAGCCTCGCCATTTTTGCAAGAATTGCAGAAGGTATTGGACCAAAGGAGGTGCTTTGAGAAACATCCCCGTCGGGGGTGGAAGCAGAAAGAACGCTAAACGATCATCCTCATCCACCAACACCAAACGCGCTTCCCCGTCACCTGCTCCAGAACCCGACCCGACTCGTGTTTGCCCTAACCCGGTTGTTGGTGGTGGTGGTGGGAATTTCGGTTCGTTTTTGGCATCAGGTGCTCATCTGGGGAATCTCTTGGAGGGTCTGAAATCAAGTGGGGCGAATCTAAAAGCTGTGCAAATGGAAGAATTTGGGGAGAATGTTAGTTCGGGTCACCTTGCGGATCCGGGTTCTGGTCGGAACCCTGTGCTGCAGATTGAAAGGAATGGGAATGCAGCAAGTTTTCTGAGTATGCAAAATGGTGATTCAAGCTGTTGGAATGGTCCTAATGGGTGGTCTAATCTCGCAATTTTCACTCCTGGGTCTACCTATGAAAATTTATGA 621 0.496 MQDPALFQPLKPHFPEQEQLKCPRCDSVNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNAKRSSSSTNTKRASPSPAPEPDPTRVCPNPVVGGGGGNFGSFLASGAHLGNLLEGLKSSGANLKAVQMEEFGENVSSGHLADPGSGRNPVLQIERNGNAASFLSMQNGDSSCWNGPNGWSNLAIFTPGSTYENL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03812 206 MobiDBLite consensus disorder prediction 61 103 - -
Viun5g03812 206 MobiDBLite consensus disorder prediction 71 87 - -
Viun5g03812 206 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Viun5g03812 206 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Viun5g03812 206 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Viun5g03812 206 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 113 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03812 Viun-Chr5 46701928 46703584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03812 11 125 C2C2-Dof Transcription Factor Family AT1G51700 57.037 1.32e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun5g03812 zf-Dof 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03812 - - gmx:100798927 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03812 5 46701928 46703584 Viun5g03812 5 46701928 46703584 ECH
Viun5g03812 5 46701928 46703584 Viun10g02559 10 39424901 39426795 PCT