Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03600 ATGGCTGAGAAAGAGACTATGTATTCATTAGGTGATTGGAGGAGAATTCCAATTTGCACTTTCTTTAAGGATGCAAGACTGGTTTTTAAAGCAGACAGTCTTGGTCGGGAAATTTTGTCAATTGCATTGCCTGCAGCAATGGCTTTGACAGCTGATCCTATTGCTTCATTGGTTGACACAGCATTTATTGGCCAAATAGGGCCAGTGGAGCTTGCTGCTGTAGGAGTTTCAATAGCTCTGTTCAATCAAGTATCAAGGATTGCAATATTCCCACTTGTCAGTGTCACCACCTCTTTTGTGGCTGAGGAAGATACCCTTAGTGGAGTAAGTCCTCAGATAGAGGAGGGTAAATGCTTGGAAGCTGGTGGGCCTGTGGATACTGAAACCAAAGAGTTATTACCACAGAGAGTTGCAGGTACAAATGTTCACAATTCAGATTCTGTTGGTGAATCTTTTAATATAGTTAAGGAGGAACACAAGAGAAGGCATATCCCTTCAGCTTCATCGGCATTATTTATCGGTGGTATACTTGGCCTCATCCAAGCAATATTTCTTATATCTGCGGCAAAACCTTTATTGAACTTCATGGGAGTAAATTCTGACTCTGCTATGCTACATCCTGCACAACAGTATCTGAGATTGAGGTCCCTCGGTGCTCCTGCTGTTCTTCTCTCCTTGGCAATGCAAGGAGTGTTCCGAGGATTTAAAGACACGAAAACACCTTTATATGCGACTGTGGCAGGAGATGCAACTAACATAGCATTGGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATTGCCCACGTTATATCTCAGTACCTAATTTCAGCTATACTCCTGTGGAGGTTGTTGGAACAAGTTGACCTTATACCTCCAAGCATAAAGCATCTGCAATTAGACCGTTTTCTTAAAAATGGTTTTCTATTATTAATGAGAGTCGTCGCTGTAACATTCTGTGTGACACTGGCTGCATCATTAGCTGCACGGCAAGGATCAACGTCCATGGCTGCATTTCAAGTTTGTCTGCAGGTTTGGTTGGCAGTGTCTCTTCTTGCTGATGGTCTGGCAGTTGCAGGGCAGGCTATTCTTGCTGGTGCATTTGCTAATAAGGACTTCAATAGGGCATCGGCAACCGCATCCCGAGTTGTGCAGATGGGTTTGGTTCTAGGATTGGCACTTGCATTCATTCTTGGAACAGGATTGCACTTTGGTGCTAAAATATTTACAAAAGATGCTGATGTGCTCCACCTCATTCAAATTGGGATCCCGTTTGTGGCTGTCACTCAACCCTTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGAGCTTCTGATTTTGCATATTCAGCCTTCTCCATGGTTGTGGTGGCAATTCTAAGCATTATTTGTCTCCTTATTTTATCATCCGCGGGTGGTTTCATTGGTATTTGGGTTGCTTTGACCATATATATGGGTCTTAGAGCATTTGCTGGCTTCTTGAGGATTGGAACAGGATCAGGACCTTGGGAGTTCCTAAGGAGCTCATAA 1551 0.4326 MAEKETMYSLGDWRRIPICTFFKDARLVFKADSLGREILSIALPAAMALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTLSGVSPQIEEGKCLEAGGPVDTETKELLPQRVAGTNVHNSDSVGESFNIVKEEHKRRHIPSASSALFIGGILGLIQAIFLISAAKPLLNFMGVNSDSAMLHPAQQYLRLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDATNIALDPLFMFVFRLGVSGAAIAHVISQYLISAILLWRLLEQVDLIPPSIKHLQLDRFLKNGFLLLMRVVAVTFCVTLAASLAARQGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDFNRASATASRVVQMGLVLGLALAFILGTGLHFGAKIFTKDADVLHLIQIGIPFVAVTQPLNSLAFVFDGVNFGASDFAYSAFSMVVVAILSIICLLILSSAGGFIGIWVALTIYMGLRAFAGFLRIGTGSGPWEFLRSS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03600 516 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 10 515 IPR044644 -
Viun5g03600 516 NCBIfam MATE family efflux transporter 44 485 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Viun5g03600 516 Pfam MatE 318 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Viun5g03600 516 Pfam MatE 166 258 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Viun5g03600 516 CDD MATE_DinF_like 34 505 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03600 Viun-Chr5 45444242 45448915 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03600 5 45444242 45448915 Viun11g00080 11 495557 503172 ECH
Viun5g03600 5 45444242 45448915 Viun5g03600 5 45444242 45448915 ECH
Viun7g00399 7 2862512 2867169 Viun5g03600 5 45444242 45448915 ECH
Viun5g03600 5 45444242 45448915 Viun11g02186 11 36769344 36773220 PCT