Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03539 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAACAACAAAATCAACATCAGGCAAATGGCGGTAACAGTCCCCAGCTGCTTCCTCCGATGCCTCAACAGCCACAGGAACCTCACGTCGGAGTTCATGAAGCCGCAGGCTCAATCCGGCCCGGTTTGATGGCGGATCGGTCCAAGATTCCGGCTCAGGAAGGAGCTCTCAAGTGTCCTCGGTGCGACTCCACCAACACAAAGTTCTGCTACTTCAACAACTACAGCCTCTCGCAGCCGCGCCACTTTTGCAAGACTTGCAGGCGTTATTGGACAAGAGGTGGTGCTCTCAGGAACGTTCCTGTCGGCGGAGGATGTCGGAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCGGTTCCTACTGAGAAATCATCACTTCCCAATCCCACAAGCGCGATGCCTGAACTTATTGGTCGATTCCCACAACCTTTCATGGCCTCTCTTCAGAGTATGAACCGTTATGGTGCAGGGAACGCCGGTGTTAACTTGCGTGAGATGCAAGCTCAGAACGGTTCGCATATGGGGTTTCAAATTGGTGGCCAGAGTCATGGTTCAAGTGTTACTGCTGCTGGAGGAGGATTGGAACAGTGGCGGTTTCAGCAATTCCCTTTCTTGAATGGTTTTGACTCAGCTTCTGCTGTTTCTTCCTACCCTTTTCAAACTGAAAGTGTTGAAGGCTTGGTTGGAGATATTGCTGCAAGTTCTAGGGTTACTCAGCTGCCACCACGGGTTAAATTGGAATACAACGGTGGTTTAAATTTGTCAAGATCTCCTTTGAGTGTGTCAGAAAATAGTAACCATTACTATTCGTGGACGGATTTATCTGGTCTTGCATCTTCTTCCGCTAGTCATCTCTTGTAA 912 0.4879 MVFSSIPVYLDPPNWQQQQNQHQANGGNSPQLLPPMPQQPQEPHVGVHEAAGSIRPGLMADRSKIPAQEGALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVPTEKSSLPNPTSAMPELIGRFPQPFMASLQSMNRYGAGNAGVNLREMQAQNGSHMGFQIGGQSHGSSVTAAGGGLEQWRFQQFPFLNGFDSASAVSSYPFQTESVEGLVGDIAASSRVTQLPPRVKLEYNGGLNLSRSPLSVSENSNHYYSWTDLSGLASSSASHLL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03539 303 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Viun5g03539 303 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Viun5g03539 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 200 IPR045174 GO:0003700|GO:0006355
Viun5g03539 303 MobiDBLite consensus disorder prediction 116 153 - -
Viun5g03539 303 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Viun5g03539 303 MobiDBLite consensus disorder prediction 16 48 - -
Viun5g03539 303 MobiDBLite consensus disorder prediction 16 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03539 Viun-Chr5 45132627 45134346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03539 8 222 C2C2-Dof Transcription Factor Family AT3G55370 42.324 9.12e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun5g03539 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03539 - - gmx:100775899 471.855