Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03451 ATGGATCCTTCTTGTGAACAACCCCAGCAAATGTCAGTGGAGAAGAAACCAAGGCCTAATCCAGAACAAGCTCTGAAATGTCCAAGATGCGACTCCACCAGCACAAAATTTTGCTACTACAACAACTATAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCCGAAAGAAGAGATCATCATCGTCGTCATCGTCATCGTTTAAGAGGGATCATGATCAGAGTTTCACACCCAATCTTAACCCACTCACTACATTCCCTCAGTTGTGTTATGGCTCCAATGACTTCACTCTAGCATTGGCAAGACTTCAAAAACAAGCAAGTGGACAATTGGGTTACAATGACCATGAAATTTCTGGTGTGGGGAACCCCACAGGCTCTTTTTCTGACATGAATCCCTACTCAGAGCACCCTTCATTTCTGGACGCAATTCGAAGTGGGTTCCTTGAAACACAAAACCATCTTCAGAATTTGTATTACATGTATGGAAATGGAGACATTGGGGAGGTGGATAATGGAAATTCTGGTGGAGTTGGGATCAGCGAAGAGATGATGCTCCCTTATAATCAAGTGATGAACAATGCAGCCACTCAATCAGTGAGTGCATTACTGAAGCAGGAACAGTGTGGTGGCAGTGAGCAATTCAAACAATGGCAGCTTAATGCAGACACAAACAATGGTGAAATTGATTCAGGAAGAGCAATTCAAAGTTGGAACAGTTTCTCATCTTCTTGGCATGGACTTCTGCAGAGTCCCCTCATGTAG 822 0.4392 MDPSCEQPQQMSVEKKPRPNPEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSSSSSSSFKRDHDQSFTPNLNPLTTFPQLCYGSNDFTLALARLQKQASGQLGYNDHEISGVGNPTGSFSDMNPYSEHPSFLDAIRSGFLETQNHLQNLYYMYGNGDIGEVDNGNSGGVGISEEMMLPYNQVMNNAATQSVSALLKQEQCGGSEQFKQWQLNADTNNGEIDSGRAIQSWNSFSSSWHGLLQSPLM 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03451 273 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Viun5g03451 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 198 IPR045174 GO:0003700|GO:0006355
Viun5g03451 273 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
Viun5g03451 273 MobiDBLite consensus disorder prediction 1 16 - -
Viun5g03451 273 MobiDBLite consensus disorder prediction 70 96 - -
Viun5g03451 273 MobiDBLite consensus disorder prediction 1 25 - -
Viun5g03451 273 MobiDBLite consensus disorder prediction 76 96 - -
Viun5g03451 273 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03451 Viun-Chr5 44564542 44565945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03451 1 190 C2C2-Dof Transcription Factor Family AT5G60200 42.857 1.52e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun5g03451 zf-Dof 6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03451 - - gmx:778104 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03451 5 44564542 44565945 Viun5g03451 5 44564542 44565945 ECH