Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01626 ATGGTTTATACCTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCCAAATCATCAGCACCAAGGAAACAACACTGCTGTAACCTCCCACCTTATTCTTCCACCACCGATACAACCGCCGCCACCGCCGCCGCCCTCACAACCCCATGGACTCGGTGCTACTGCCACTGCCGCCTCCATCAGGCCGGGTTCCATGGCGGATAGGGCCAGGATGGCCAACATACCCATGCAGGAAGCTCCGCAGAAGTGTCCTAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGCAGAAGGTACTGGACTCGCGGCGGGGCCTTGAGGAACGTCCCTGTTGGCGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGTGGCAGCGCCAGGTCCCCGGCAAACTCCGATCGCCAAACGGCGAGTGCTGGCTCCGCTTCCACGACCAGTGGCTCATCTTCTGCTGACATGGTGGCAGGCCTTGGCGGCACCGGGGTGCCGCCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATCACCACCTCGGTGGTGGTGGTGGTGGTGGAGGAGAGATAGGGTTAAACTATGGCTTGAACTATGGCGCGATTTCAGGTCCAATGGGAGGAATAGGGGACTTGAATTTCCATATTGGAAACGCTTTAAATGGTGGTGGTGGTGGTTCTGTGTTGTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCGTCACACGGGTTGTACCCATTTGATGGTGCTAGTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTTCTGGGGTGATGTCTCAGTTTGCTTCAGTCAAAATGGAAGATAATCATCATCAGGAGCTTGGTTTGCAGAGACAGTTCTTGGGGGTCAACAATAACCCTAATACGAATGAGCAATATTGGAGTGCTGGTGGTGGTGGTGGTGCCACTTCTGCTTGGACTGATCTTTCTGCTTTCAGTTCTTCTTCCACTACCAGTAACCCCCTATAG 1101 0.5377 MVYTSIPAYIDPANWQQQPNHQHQGNNTAVTSHLILPPPIQPPPPPPPSQPHGLGATATAASIRPGSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGGSARSPANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPPSLRFMAPLHHLGDHHLGGGGGGGGEIGLNYGLNYGAISGPMGGIGDLNFHIGNALNGGGGGSVLSGLDQWRMPQTHQFPFLSGLEASSSHGLYPFDGASGSDGYGGTPIKVSTSGVMSQFASVKMEDNHHQELGLQRQFLGVNNNPNTNEQYWSAGGGGGATSAWTDLSAFSSSSTTSNPL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01626 366 MobiDBLite consensus disorder prediction 32 59 - -
Viun5g01626 366 ProSiteProfiles Zinc finger Dof-type profile. 84 138 IPR003851 GO:0003677|GO:0006355
Viun5g01626 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 65 166 IPR045174 GO:0003700|GO:0006355
Viun5g01626 366 ProSitePatterns Zinc finger Dof-type signature. 86 122 IPR003851 GO:0003677|GO:0006355
Viun5g01626 366 MobiDBLite consensus disorder prediction 139 174 - -
Viun5g01626 366 MobiDBLite consensus disorder prediction 128 177 - -
Viun5g01626 366 Pfam Dof domain, zinc finger 83 138 IPR003851 GO:0003677|GO:0006355
Viun5g01626 366 MobiDBLite consensus disorder prediction 36 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01626 Viun-Chr5 13742589 13744362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01626 1 359 C2C2-Dof Transcription Factor Family AT2G37590 41.489 7.64e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun5g01626 zf-Dof 4.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01626 - - gmx:100796820 518.464