Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01625 ATGGTTTATACCTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAGCCAAATCATCAGCACCAAGGAAACAACACTGCTGTAACCTCCCACCTTATTCTTCCACCACCGATACAACCGCCGCCACCGCCGCCGCCCTCACAACCCCATGGACTCGGTGCTACTGCCACTGCCGCCTCCATCAGGCCGGGTTCCATGGCGGATAGGGCCAGGATGGCCAACATACCCATGCAGGAAGCTCCGCAGAAGTGTCCTAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGCAGAAGGTACTGGACTCGCGGCGGGGCCTTGAGGAACGTCCCTGTTGGCGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGTGGCAGCGCCAGGTCCCCGGCAAACTCCGATCGCCAAACGGCGAGTGCTGGCTCCGCTTCCACGACCAGTGGCTCATCTTCTGCTGACATGGTGGCAGGCCTTGGCGGCACCGGGGTGCCGCCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATCACCACCTCGGTGGTGGTGGTGGTGGTGGAGGAGAGATAGGGTTAAACTATGGCTTGAACTATGGCGCGATTTCAGGTCCAATGGGAGGAATAGGGGACTTGAATTTCCATATTGGAAACGCTTTAAATGGTGGTGGTGGTGGTTCTGTGTTGTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCGTCACACGGGTTGTACCCATTTGATGGTGCTAGTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTTCTGGGGTGATGTCTCAGTTTGCTTCAGTCAAAATGGAAGATAATCATCATCAGGAGCTTGGTTTGCAGAGACAGTTCTTGGGGGTCAACAATAACCCTAATACGAATGAGCAATATTGGAGTGCTGGTGGTGGTGGTGGTGCCACTTCTGCTTGGACTGATCTTTCTGCTTTCAGTTCTTCTTCCACTACCAGTAACCCCCTATAG 1104 0.538 MVYTSIPAYIDPANWQQQQPNHQHQGNNTAVTSHLILPPPIQPPPPPPPSQPHGLGATATAASIRPGSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGGSARSPANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPPSLRFMAPLHHLGDHHLGGGGGGGGEIGLNYGLNYGAISGPMGGIGDLNFHIGNALNGGGGGSVLSGLDQWRMPQTHQFPFLSGLEASSSHGLYPFDGASGSDGYGGTPIKVSTSGVMSQFASVKMEDNHHQELGLQRQFLGVNNNPNTNEQYWSAGGGGGATSAWTDLSAFSSSSTTSNPL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01625 367 MobiDBLite consensus disorder prediction 140 175 - -
Viun5g01625 367 MobiDBLite consensus disorder prediction 129 178 - -
Viun5g01625 367 MobiDBLite consensus disorder prediction 37 53 - -
Viun5g01625 367 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Viun5g01625 367 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 59 167 IPR045174 GO:0003700|GO:0006355
Viun5g01625 367 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Viun5g01625 367 MobiDBLite consensus disorder prediction 33 60 - -
Viun5g01625 367 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01625 Viun-Chr5 13742589 13744461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01625 1 360 C2C2-Dof Transcription Factor Family AT2G37590 41.489 1.45e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun5g01625 zf-Dof 4.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01625 - - gmx:100796820 522.702