Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00570 ATGTCGGAGCCAAAAGACCCCACGATCAAGCTCTTCGGGAAGACGATCCCCTTGTCGGAGATTCCGACTGGATCCGCCGGAGCTCCGGCTTCGTCTTCCGGTGACCTTGTTGATGACAGTCTTGAACACAGCCATGCTTCTTTTTCCTCCAACTCCTCCAGGGAGTCTCATACGCGAGAGGAGGGTGTTGTGGACAAGGACTCACTGGGAGAAAAACCAGCTGAAGATAAGAAGGAAGTCCCAACCCAATCATTTGAAGAGATCAACAATCCAGATTCCGCCTCAGGAACCTGTGAAGAATCCATTACTGTACCCACTGACAAGGAGACCACTACATTGAAAACTTCAAAAACTGAAGAAGAACTAAGCGAGACAAGTAAATCACAGGATAAGAACCTCAAAAAACCAGACAAAATACTTCCATGTCCCCGCTGTAATAGTATGGATACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGTCACTTCTGCAAGAACTGCCAGAGATACTGGACTGCTGGGGGAACTATGAGGAATGTTCCTGTAGGTGCTGGTCGCAGGAAGAACAAGAGCTCTACTTCTCACTACCGCCAGATAACTGTTTCTGAGGCTGCACCCCAGAATCCTCAAATAGACTTGCCAAATGCAGCGTATCATCCTTCCTTGAAATGCAATGGGGCAGTCCTTACATTTGGATCTGATACACCCTTGTGTGAATCAATGGCATCGGTTTTGAACCTTGCTGATAAAACCGTGCACAACTATGCAAGAAATGGATTTCATAAACCTGAAGAACTAAAAGTTCCAGTTCCACATGCCAGTGGAGAAAAAGGAGATGATCTATCCAATAAATCTTCAGTTACCTCCACAAAGTCAGTGGAAGGTGCAAGCATCAATGGAGCCCAAGAACAAGCTATGCCAAACTGCCATCGTTTCCCACCACAGGTTCCTTACTTTACCGGTAACTCTTGGCCTATTCCATGGAATCCAGTACAGTGGAGTTCTCCAGTACCACCTCCTGCTTTCGGTCCTCCCGGATTCGCCATGCCACTCTATCCTGCAGCAGCTTATTGGGGCTGTGCTGTGTCTGGTGCATGGAACATCCCATGGGTAGCACAACCGTCCTCGCCGAACGGTGCAACTTCAAACTCTGGCCCTAACTCACCAACCTTGGGTAAACATTCAAGGGAAGACAACATTCTGAAACCAAATGAATCTGGTGGTAGTGAGGATGGACACAACAAAGAAAACAACAAAGAGAAGTGCCTGTGGGTTCCAAAAACTCTAAGGATTGATGACTCTGGAGAAGCAGCAAAAAGCACTATATGGACAACACTGGGGATTAAAACTGACAAGGCTGATTCAGTTCCAAGGGAAACACTCTTTAAAGGCTTCCCTTCAAAGCTTGATGAGAAAAACCATTCAATGCATGCCTCACCAGTATTGCAGGCCAATCCTGCAGCATTGTCAAGGTCACTTAACTTTCATGAGACCTCATAG 1509 0.4659 MSEPKDPTIKLFGKTIPLSEIPTGSAGAPASSSGDLVDDSLEHSHASFSSNSSRESHTREEGVVDKDSLGEKPAEDKKEVPTQSFEEINNPDSASGTCEESITVPTDKETTTLKTSKTEEELSETSKSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSTSHYRQITVSEAAPQNPQIDLPNAAYHPSLKCNGAVLTFGSDTPLCESMASVLNLADKTVHNYARNGFHKPEELKVPVPHASGEKGDDLSNKSSVTSTKSVEGASINGAQEQAMPNCHRFPPQVPYFTGNSWPIPWNPVQWSSPVPPPAFGPPGFAMPLYPAAAYWGCAVSGAWNIPWVAQPSSPNGATSNSGPNSPTLGKHSREDNILKPNESGGSEDGHNKENNKEKCLWVPKTLRIDDSGEAAKSTIWTTLGIKTDKADSVPRETLFKGFPSKLDEKNHSMHASPVLQANPAALSRSLNFHETS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00570 502 MobiDBLite consensus disorder prediction 267 296 - -
Viun5g00570 502 MobiDBLite consensus disorder prediction 54 83 - -
Viun5g00570 502 PANTHER CYCLIC DOF FACTOR 2 1 502 IPR045174 GO:0003700|GO:0006355
Viun5g00570 502 ProSitePatterns Zinc finger Dof-type signature. 142 178 IPR003851 GO:0003677|GO:0006355
Viun5g00570 502 MobiDBLite consensus disorder prediction 267 282 - -
Viun5g00570 502 MobiDBLite consensus disorder prediction 379 422 - -
Viun5g00570 502 MobiDBLite consensus disorder prediction 1 137 - -
Viun5g00570 502 MobiDBLite consensus disorder prediction 112 137 - -
Viun5g00570 502 MobiDBLite consensus disorder prediction 379 397 - -
Viun5g00570 502 MobiDBLite consensus disorder prediction 398 422 - -
Viun5g00570 502 ProSiteProfiles Zinc finger Dof-type profile. 140 194 IPR003851 GO:0003677|GO:0006355
Viun5g00570 502 MobiDBLite consensus disorder prediction 84 111 - -
Viun5g00570 502 Pfam Dof domain, zinc finger 137 194 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00570 Viun-Chr5 3315790 3319521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00570 6 502 C2C2-Dof Transcription Factor Family AT5G39660 45.211 9.35e-113 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun5g00570 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00570 - - gmx:100788247 785.023