Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00309 ATGTTCCCTTCCTCTAATTACACCTCCTCGGGCTCTTACCCTCGTTTCCCTTCTTCATCTTCTTCTTCTGCTTCGCCTTACCCTTCTTTCACTTTCCTTCACCCTGAAAATTCTTCCGCCAGCACCACCTTTCTCCATGATCCACTTTCTGTTACCTTCATACCAACTAACTATCATGCTCCAATGCCTGAAACACTGGCCAATTGGGCAGTTGCAGATTGTGCCGCTGCAGCAATGCTCAACCAGGATCTCGGTGGTGCCCTTTATGGCATCACCAAGAAACCAGCGAGGAAAACGGCCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGCTTGAGGGACCGGAGGGTGAGGCTTTCCATTGAGATCGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTCGACTGGCTCTTCACCAAGTCCAAGAAGGCAATTAAGGAGCTAACTCGAAGCAAGCACAGTGCTGATAGCTTCGAATTCTCTTCATCTTCGGATGGTGAAGTGGTTTCTGTGATCCACCAGCAGCAACAAGGGGTGGACTTGGAAGAGGGGAAGTTGAAAGAACCTGCTTATTGTGTCAAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAAAGGACTAGTTGCAAGATACTGTGCAGTGGGGAAGGGAAGGTGCAAGAATCCAAGAAAAAGTGCCCTGCAACTGAAAACCATCAAATCCTGAACCAGTTAAGGTCACCCCTTCAACTTCATCCTCAAGATTTAGATGGAGGAGTGCCAAGAGATGACGACTTCAACGTTATTGAGGAATCCATTGTCATCAAGAGAAAGTTGAAACACTCTCTGATGTCTTCCATTCATCACCAAAACGCTGTGATCCCTAAGGAAGCAAGTGTGAACAACAGTGACTACCACTCCTTCCCCAATTTGTCGCCAAATTGGGAAGCTAATAATAGTGCTGCCAATGGACGCTCCACCTTTTGTGCAATAGCCAGCATGAATCTTTCTGCAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCTACCTAA 1098 0.4699 MFPSSNYTSSGSYPRFPSSSSSSASPYPSFTFLHPENSSASTTFLHDPLSVTFIPTNYHAPMPETLANWAVADCAAAAMLNQDLGGALYGITKKPARKTAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEFSSSSDGEVVSVIHQQQQGVDLEEGKLKEPAYCVKAKMKESREKARARARERTSCKILCSGEGKVQESKKKCPATENHQILNQLRSPLQLHPQDLDGGVPRDDDFNVIEESIVIKRKLKHSLMSSIHHQNAVIPKEASVNNSDYHSFPNLSPNWEANNSAANGRSTFCAIASMNLSAGLQIFGKSWEECTNPHPT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00309 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 93 330 IPR005333 GO:0003700
Viun5g00309 365 Pfam TCP family transcription factor 99 226 IPR017887 -
Viun5g00309 365 ProSiteProfiles TCP domain profile. 101 159 IPR017887 -
Viun5g00309 365 ProSiteProfiles R domain profile. 209 226 IPR017888 -
Viun5g00309 365 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00309 Viun-Chr5 1825078 1826983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00309 55 223 TCP Transcription Factor Family AT1G67260 40.000 2.40e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun5g00309 TCP 9.1e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00309 5 1825078 1826983 Viun3g04747 3 54901668 54903743 ECH
Viun5g00309 5 1825078 1826983 Viun5g00309 5 1825078 1826983 ECH
Viun9g00858 9 6485287 6487241 Viun5g00309 5 1825078 1826983 ECH