Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00180 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCAGCAGCCTAATCCGCCGGCAGGAATTGGCAACCAGAATCCACATATTCCACCACCTCTTCAGCCGTCACCTTCATCAGTGACGGCCGCTATCGGAGGTGGTGGTAGTTGCGGTAGCTACCCGGGCTCGATTAGACCGGGATCAATGGCTGATAGAGCTAGAATGGCGAAGATACACCAACCTGATGCAGGACTCAAATGTCCGCGATGTGAATCTGCCAACACCAAGTTTTGCTACTACAACAACTACAGCCTTTCACAGCCGCGGCACTTTTGCAAGACCTGCCGGCGTTACTGGACCAGAGGCGGTGCACTCAGAAACGTGCCGGTTGGTGGTGGTTGCAGAAGGAACAAAAGAAGCAAAGGAAGTGGCGGTAGATCGAAGTCTCCGATGAAACCCTCGACAGGTTCTACCTCTGCAAGTGCTAATTCTTCTTCCAGTGGCTGCACCACTGATCATGTGATGATGACTCACTTCCCAACTCCAACGCAAACTCAATTTCCATTCTTGACCTCCTTGCATCACTATAACAGTGACTATGGAGGCATTGGATCTCATTTTGGGACGATGACAACGACGACACCTTTGGTGGCTAGAAATAGCAGCGATGTTGAGTTTCAAATCGGTACTGGTTCAGCTTCATCGCTTGGTAACAGTATGTTGTCAAATGGACTCGGTGAGCAATGGAGGTTGAACAATCTGCAACAACAAGTTCAGCAGCAGTTTCCGTTTTTGAGCACTGAGCCACAGATTGGGTTGTTTCAGTTTGGTGGTGGAGAAAACAACAATGCTGAACCTCCAAGTTATGCAAAAGATGGAGTCAGGTTTAACATTCGTTCTAAACTAGATTCCATTTCTGGTCTGAGTGGGTTGATGCCTCAGGTTAACACGATAAAGATGGAGGAAAATATTCAAGGTTTGAATTTGCCAAAAAATCTCTTGATGGGTGGTTCGGGAAATGATGCACTTTGGAATGGAAGTGGCAATGCATGGAGTGAAGTTCCTTGTTTCACTCCTTCAAATAACCACTTGTTGTGA 1092 0.4753 MVFPSLPIYLDPPNWSQQQQPNPPAGIGNQNPHIPPPLQPSPSSVTAAIGGGGSCGSYPGSIRPGSMADRARMAKIHQPDAGLKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSGGRSKSPMKPSTGSTSASANSSSSGCTTDHVMMTHFPTPTQTQFPFLTSLHHYNSDYGGIGSHFGTMTTTTPLVARNSSDVEFQIGTGSASSLGNSMLSNGLGEQWRLNNLQQQVQQQFPFLSTEPQIGLFQFGGGENNNAEPPSYAKDGVRFNIRSKLDSISGLSGLMPQVNTIKMEENIQGLNLPKNLLMGGSGNDALWNGSGNAWSEVPCFTPSNNHLL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00180 363 MobiDBLite consensus disorder prediction 145 167 - -
Viun5g00180 363 Pfam Dof domain, zinc finger 82 137 IPR003851 GO:0003677|GO:0006355
Viun5g00180 363 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Viun5g00180 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 74 251 IPR045174 GO:0003700|GO:0006355
Viun5g00180 363 MobiDBLite consensus disorder prediction 11 27 - -
Viun5g00180 363 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
Viun5g00180 363 MobiDBLite consensus disorder prediction 127 167 - -
Viun5g00180 363 MobiDBLite consensus disorder prediction 28 42 - -
Viun5g00180 363 MobiDBLite consensus disorder prediction 11 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00180 Viun-Chr5 1047281 1049288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g00180 1 255 C2C2-Dof Transcription Factor Family AT2G37590 38.550 1.22e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun5g00180 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00180 - - vun:114185583 643.269