Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01059 ATGTATCTTGGAACTGCTCAGAAGCTTCACACTGTTCTTGTGGAAAAAAACCATTCAACAACAACAACACTACCATTAATTAATACACAAGGGGACATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCCACTTCTCAGGTGGGATATCAGATTCCGGCCAACTCTGCAACCATGAATGCTTACAATGGCATAAAGAAAAAAGAAGTTGAAATGCCCTGTGCTGAAAACTCTGAGAATAGCAAGCAAGAGACCCCACATAATAATCCGCAGGAAAATGAGTCAAAAGTAAACTCCAAAGCAGTAGAAAATAACACAGAGAGTAGCAGCACAGATGAAGATAAAATCTTGAAGAAACCAGACAAGATTCTGCATTGTCCTCGATGCAACAGTTTAGACACCAAATTCTGTTATTTCAATAACTACAATGTGAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCAGGTGGAACCATGAGAAATGTTCCAGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATATCGTCACATTATTGTATCCTGTGACGGAATTCCAACTACAAGTGACTCTTCTTGTCACCAACTTTCAACAACACTTCAATCTGCCGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTGTTGAAATTTTCTCCTGATGCCCCTCCTCTCTGTGAATCCATGGAGTCAATGCTTAATCTCAAAGAACAAAATCATGAAAAAGTGGAGGAGGAAGTATCCTTATGTGGATCATCATCTATGACCAATGCTTGCACTCCAAGAAACAAATCAACTGAACCAACTGCATCAAAACCTCTGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCAAGATTGGAACAATGTTGCTTCCACTGCATCAGTTCACCCCTCTTCACTACAAATTTGCAACCCTTATACCAGTGCCGACCCTGCTTCAATGCAGTGGTGTCCTACACCGATCATGGCAGTTCCAACAATCTACCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGGGTGGAACAGGAGCAGCTTCAACGGGTTTCAATGGCTGCCTTTCACCTACTTCCTCTACCAGTAATAGCTGCTGCTCCGGCAACGGCTCCCCAACACTTGGAAAACACACAAGAGACAACCTTTCAACAGATGAACAAAAATCAGACATGTGTGTGTTGGTTCCAACGACCCTTACAATTGATGATCCAAATGGGGCCTCAAAATTGGCCTCATCAGGAACCAACCCTGATAACCAGCAATGTGTACCAGAAGGTGCTATTTCAAAAAGGGCAAAGGCTAGAGAAGGGAAAGACCGTGTCTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCGATTTCTCGTGCTCATGCATTCCAAGAGGGCATTTGA 1473 0.4386 MYLGTAQKLHTVLVEKNHSTTTTLPLINTQGDMSNKDPGIRLFGRKIPLPESQIPATSQVGYQIPANSATMNAYNGIKKKEVEMPCAENSENSKQETPHNNPQENESKVNSKAVENNTESSSTDEDKILKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVSCDGIPTTSDSSCHQLSTTLQSAAVFRSSTDNGTVLKFSPDAPPLCESMESMLNLKEQNHEKVEEEVSLCGSSSMTNACTPRNKSTEPTASKPLQCYPVPPWIFPWNQDWNNVASTASVHPSSLQICNPYTSADPASMQWCPTPIMAVPTIYPPSFPLQFVPGSYWGGTGAASTGFNGCLSPTSSTSNSCCSGNGSPTLGKHTRDNLSTDEQKSDMCVLVPTTLTIDDPNGASKLASSGTNPDNQQCVPEGAISKRAKAREGKDRVLGVSQILEANPAAISRAHAFQEGI 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01059 490 PANTHER CYCLIC DOF FACTOR 2 35 488 IPR045174 GO:0003700|GO:0006355
Viun4g01059 490 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Viun4g01059 490 Coils Coil 246 266 - -
Viun4g01059 490 Pfam Dof domain, zinc finger 133 190 IPR003851 GO:0003677|GO:0006355
Viun4g01059 490 MobiDBLite consensus disorder prediction 86 127 - -
Viun4g01059 490 MobiDBLite consensus disorder prediction 391 413 - -
Viun4g01059 490 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Viun4g01059 490 MobiDBLite consensus disorder prediction 428 448 - -
Viun4g01059 490 MobiDBLite consensus disorder prediction 88 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01059 Viun-Chr4 11358723 11361710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01059 37 488 C2C2-Dof Transcription Factor Family AT5G39660 34.043 8.14e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun4g01059 zf-Dof 5.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01059 - - pvu:PHAVU_004G054000g 730.324