Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun4g01058 ATGTATCTTGGAACTGCTCAGAAGCTTCACACTGTTCTTGTGGAAAAAAACCATTCAACAACAACAACACTACCATTAATTAATACACAAGGGGACATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCCACTTCTCAGAATGCTTACAATGGCATAAAGAAAAAAGAAGTTGAAATGCCCTGTGCTGAAAACTCTGAGAATAGCAAGCAAGAGACCCCACATAATAATCCGCAGGAAAATGAGTCAAAAGTAAACTCCAAAGCAGTAGAAAATAACACAGAGAGTAGCAGCACAGATGAAGATAAAATCTTGAAGAAACCAGACAAGATTCTGCATTGTCCTCGATGCAACAGTTTAGACACCAAATTCTGTTATTTCAATAACTACAATGTGAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCAGGTGGAACCATGAGAAATGTTCCAGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATATCGTCACATTATTGTATCCTGTGACGGAATTCCAACTACAAGTGACTCTTCTTGTCACCAACTTTCAACAACACTTCAATCTGCCGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTGTTGAAATTTTCTCCTGATGCCCCTCCTCTCTGTGAATCCATGGAGTCAATGCTTAATCTCAAAGAACAAAATCATGAAAAAGTGGAGGAGGAAGTATCCTTATGTGGATCATCATCTATGACCAATGCTTGCACTCCAAGAAACAAATCAACTGAACCAACTGCATCAAAACCTCTGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCAAGATTGGAACAATGTTGCTTCCACTGCATCAGTTCACCCCTCTTCACTACAAATTTGCAACCCTTATACCAGTGCCGACCCTGCTTCAATGCAGTGGTGTCCTACACCGATCATGGCAGTTCCAACAATCTACCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGGGTGGAACAGGAGCAGCTTCAACGGGTTTCAATGGCTGCCTTTCACCTACTTCCTCTACCAGTAATAGCTGCTGCTCCGGCAACGGCTCCCCAACACTTGGAAAACACACAAGAGACAACCTTTCAACAGATGAACAAAAATCAGACATGTGTGTGTTGGTTCCAACGACCCTTACAATTGATGATCCAAATGGGGCCTCAAAATTGGCCTCATCAGGAACCAACCCTGATAACCAGCAATGTGTACCAGAAGGTGCTATTTCAAAAAGGGCAAAGGCTAGAGAAGGGAAAGACCGTGTCTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCGATTTCTCGTGCTCATGCATTCCAAGAGGGCATTTGA 1437 0.4363 MYLGTAQKLHTVLVEKNHSTTTTLPLINTQGDMSNKDPGIRLFGRKIPLPESQIPATSQNAYNGIKKKEVEMPCAENSENSKQETPHNNPQENESKVNSKAVENNTESSSTDEDKILKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVSCDGIPTTSDSSCHQLSTTLQSAAVFRSSTDNGTVLKFSPDAPPLCESMESMLNLKEQNHEKVEEEVSLCGSSSMTNACTPRNKSTEPTASKPLQCYPVPPWIFPWNQDWNNVASTASVHPSSLQICNPYTSADPASMQWCPTPIMAVPTIYPPSFPLQFVPGSYWGGTGAASTGFNGCLSPTSSTSNSCCSGNGSPTLGKHTRDNLSTDEQKSDMCVLVPTTLTIDDPNGASKLASSGTNPDNQQCVPEGAISKRAKAREGKDRVLGVSQILEANPAAISRAHAFQEGI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun4g01058 478 Pfam Dof domain, zinc finger 121 178 IPR003851 GO:0003677|GO:0006355
Viun4g01058 478 Coils Coil 234 254 - -
Viun4g01058 478 PANTHER CYCLIC DOF FACTOR 2 35 476 IPR045174 GO:0003700|GO:0006355
Viun4g01058 478 MobiDBLite consensus disorder prediction 379 401 - -
Viun4g01058 478 ProSitePatterns Zinc finger Dof-type signature. 126 162 IPR003851 GO:0003677|GO:0006355
Viun4g01058 478 MobiDBLite consensus disorder prediction 74 116 - -
Viun4g01058 478 ProSiteProfiles Zinc finger Dof-type profile. 124 178 IPR003851 GO:0003677|GO:0006355
Viun4g01058 478 MobiDBLite consensus disorder prediction 416 436 - -
Viun4g01058 478 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun4g01058 Viun-Chr4 11358723 11361712 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun4g01058 37 476 C2C2-Dof Transcription Factor Family AT5G39660 33.398 9.66e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun4g01058 zf-Dof 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun4g01058 - - pvu:PHAVU_004G054000g 703.745