Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04747 ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTACTCTCCTACCCTAGCCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACAAATTCTTCAAAAGACCAATCCAATTTTCCTCCTCCTCCTCTTCCTCTTCCTCTTCCTCCTCCTTTGTCCTTTCTCCAATCCTTTGACGAAAATATCTTCCTCGAACACCACCATGACCTGCTCTTACTTCACCCCTCTCTATTACCCGACCCCGGACACAAAAACCTTCATGCTGCCGCCGAAATCCCGGCAATTCCCTCCGCTGGACTAGGTGGCGCCGCCCCTATGGACCACTCCACAAGGAAGAGATCCAGCAAGAGAGATCGCCACAGCAAAATCAACACCGCGCGAGGCCTCAGGGACCGGAGAATGAGGTTGTCCCTCGAAGTTGCAAAGAGGTTCTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTCGAGTGGCTACTAAACCAAGCTAAAGTCGAAATCAAACAACTTGCTAGGGAAAAGAACAGTGTTGGTGGCGCCAAGAGTGCATCATCGACTTCCGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTTGTGAGTGGGGTTAACGAGGAGCAAGAGAGGGAGACACCCAACATGAAGAGAAGAACAAGTAAGGTTTGTAGAAAGAGTGCATTCAATACCATCGATAAGGAATCGAGGGAAAAGGCGAGAGAAAGGGCGAGAGAAAGAACAAGAGAGAAGATGAGGACTCGGAGAGTGCTTGCTGCAGATGCTTCAAACCTTAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGCTACTCAGAGCCAAAGCGTGAACCACCCCTCCTTGGATGTGCACCTTCCTGAGACCGAAGAACCAAGTTCTCACGCAAAGGAACATTTGGGAACCGTGGAGGACATAGCTCGCCATGAAGATAGTTCTTTGGTGATCATGAACAAGTGGAGCCCAACCATGATATTCAATTCTCTAAACAACTCAGCAATCCTTCACGAACATCAATTTGCAGAATTTCAGTCCTTGGGAAAACCTTGGGAAACCTACAACGATCACATCTAG 1122 0.4866 MYSSNTSLNGNDLLSYPSQPFCFRPFSFESNPTNSSKDQSNFPPPPLPLPLPPPLSFLQSFDENIFLEHHHDLLLLHPSLLPDPGHKNLHAAAEIPAIPSAGLGGAAPMDHSTRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKNSVGGAKSASSTSECEGVSSLDEVVVSGVNEEQERETPNMKRRTSKVCRKSAFNTIDKESREKARERARERTREKMRTRRVLAADASNLNRLSSWNPFETVEDSAATQSQSVNHPSLDVHLPETEEPSSHAKEHLGTVEDIARHEDSSLVIMNKWSPTMIFNSLNNSAILHEHQFAEFQSLGKPWETYNDHI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04747 373 MobiDBLite consensus disorder prediction 27 48 - -
Viun3g04747 373 ProSiteProfiles R domain profile. 239 256 IPR017888 -
Viun3g04747 373 MobiDBLite consensus disorder prediction 208 259 - -
Viun3g04747 373 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 104 370 IPR005333 GO:0003700
Viun3g04747 373 MobiDBLite consensus disorder prediction 233 259 - -
Viun3g04747 373 MobiDBLite consensus disorder prediction 209 224 - -
Viun3g04747 373 ProSiteProfiles TCP domain profile. 119 177 IPR017887 -
Viun3g04747 373 MobiDBLite consensus disorder prediction 100 131 - -
Viun3g04747 373 Pfam TCP family transcription factor 118 259 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04747 Viun-Chr3 54901668 54903743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04747 115 253 TCP Transcription Factor Family AT3G18550 44.304 8.51e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun3g04747 TCP 4.1e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00309 5 1825078 1826983 Viun3g04747 3 54901668 54903743 ECH
Viun9g00858 9 6485287 6487241 Viun3g04747 3 54901668 54903743 ECH
Viun3g04747 3 54901668 54903743 Viun3g04747 3 54901668 54903743 ECH