Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun3g04693 | ATGCAGCAAATACACTCCATGGCACCAGGGACACCGGGAGGAGGAGGCGGAACCAGGTTTTTCTCCGGCACCGCCGCCGCGGACAGGAGGCTCCGACCCCACCACCAGAACCACCAGGCCCTCAAGTGCCCCCGCTGCGACTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGCAAAAACTGTCGCCGCTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGGTGCCGTAAATCCAAACGCTCCAACAAACCCGCCAAAACCTCCGACGCCGCCCCCCCACCCCCGCCGCCCGACCCGGACCATTCCAGCAGCGAGAGCTCGAGCCTGACCGCCGCTGCCGCGGAGCCGGTATCGGCGCCGATAAACTCCGATTCCACGAACATGCAAGAGTCGAAGTTGTTGGTCCCCGTGGATCCTGTTTTGGAAACGAATCCCGTGGAGCAGGGAGCGGGGGACTGCGGTGGTATCTTCTCTGAGATTGGACCTTTCACCAGCCTGATCGCTACTTCCACTAACGAGCCATTGGGTTTCGGTTTCGGCAACGCTCTGCCCGATGCGTCGTCGTTTCAGTGGCAGCACTCGAGGGTGAGCGGCAACCAGGAACTGAAGTTGCCCGAAAGCTCCTTCCTCGACCACACCGTTGATTTGTCGACTCTGCATGGTAAAACCAACCACGGGACATTCGGATCGTTGGATTGGCAGGGCGGTGCGGATCAAGGTTTGTTTGATCTACCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTCCATCTCCCCTGA | 858 | 0.5956 | MQQIHSMAPGTPGGGGGTRFFSGTAAADRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPAKTSDAAPPPPPPDPDHSSSESSSLTAAAAEPVSAPINSDSTNMQESKLLVPVDPVLETNPVEQGAGDCGGIFSEIGPFTSLIATSTNEPLGFGFGNALPDASSFQWQHSRVSGNQELKLPESSFLDHTVDLSTLHGKTNHGTFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSSLFHLP | 285 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun3g04693 | 285 | Pfam | Dof domain, zinc finger | 39 | 95 | IPR003851 | GO:0003677|GO:0006355 | |
Viun3g04693 | 285 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Viun3g04693 | 285 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 34 | 201 | IPR045174 | GO:0003700|GO:0006355 | |
Viun3g04693 | 285 | ProSiteProfiles | Zinc finger Dof-type profile. | 41 | 95 | IPR003851 | GO:0003677|GO:0006355 | |
Viun3g04693 | 285 | MobiDBLite | consensus disorder prediction | 86 | 143 | - | - | |
Viun3g04693 | 285 | MobiDBLite | consensus disorder prediction | 117 | 143 | - | - | |
Viun3g04693 | 285 | ProSitePatterns | Zinc finger Dof-type signature. | 43 | 79 | IPR003851 | GO:0003677|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun3g04693 | Viun-Chr3 | 54314947 | 54316530 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun3g04693 | 28 | 282 | C2C2-Dof Transcription Factor Family | AT5G60850 | 45.263 | 1.51e-59 | 190 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Viun3g04693 | zf-Dof | 2.8e-33 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun3g04693 | - | - | gmx:778097 | 421.779 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun3g04693 | 3 | 54314947 | 54316530 | Viun9g00805 | 9 | 6029173 | 6030800 | PCT |