Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun3g04588 | ATGCACGAAATTAGAGATCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTCGACATAGAAGAAGAAGAGGAAGAAGATGAGAGTGGTGATGGAAAAGAGGAAGAGAAAGAAGAGGATAAGGATGCTGGAGTTGAAAATATTACTGAGGAAGAGCCAGAAGCTGATCTTTCCCCGAGTGCAGGAGAGACTAAAGATTCAGTTACATCCCCCGAGGCTATTGTGAACCCCAAAACACCCTCCATAGAAGAAGAAACAGCAACATCAAAAGCTGACAAATCAGAGAAGGAGCAAGGCGATGCGGCTAACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTACAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGCGGAATGTTCCTGTGGGGGCAGGGCGGCGGAAGAACAAGAACTCTGCCTCGCATTATCGCCACATCAGTATCTCTGAGGCCCTTCAAGCAGCCAGAATTGATTCGCCTAATGGAACTCATCTTTCAACTTTGAAAGGCAATGGTAGAGTTCTCAGCTTTGGATTAGATGCACATGCACCCATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGAGAAAAAGGTTCCCGATGGCACAAAAAACGGGTTTCATCATGGCTTTGAGGATCAAAGACTCCCAATTCCTCGCAAAAGTGGGGAAAATGGTGATGACTCTTCGACTACATCTTCCATTACAGTTTCAAATTCCATGGGAGAAAGTAGCAAAAGCACCTTCCAACCACAACCGGTGCTCCAACATCATGGTTTCCTTCCTCAGCTTCCGTGTGTTCCTTGGCCCTATACATGGAATTCTCCCGTTCCCCCACCTGCCTTGTGTCCTTCCGGATATGCCTTACCATTCTATCCTCCTGCTACATTCTGGAACTGTGGAATGCCAGGGAATTGGAATGTTCCATGGTTTTCTTCACTGTCATCTGCTTCAAACCCAAACTCTCCGGGCTCCGCTCCAAACTCTCCGACTTTGGGGAAGCACTCGCGGGACGGAGACATGATTAAGCAAGACACTTTGCAGAAAGAAGAAGCTTCAAAGCCAAGAAACGGGGGTGTTTTGGTTCCCAAAACGTTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTGAATGGGGGAGGTATGTTTAAGGCATTCCAATCAAAGAAGGACGAAAAGAGTCGCGTTGAAGCCTCTCCTGTGTTGATGGCTAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAGAACTCATGA | 1410 | 0.4624 | MHEIRDPAIRLFGQKIPFPEDVDIEEEEEEDESGDGKEEEKEEDKDAGVENITEEEPEADLSPSAGETKDSVTSPEAIVNPKTPSIEEETATSKADKSEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHISISEALQAARIDSPNGTHLSTLKGNGRVLSFGLDAHAPICDSMASVLNLGEKKVPDGTKNGFHHGFEDQRLPIPRKSGENGDDSSTTSSITVSNSMGESSKSTFQPQPVLQHHGFLPQLPCVPWPYTWNSPVPPPALCPSGYALPFYPPATFWNCGMPGNWNVPWFSSLSSASNPNSPGSAPNSPTLGKHSRDGDMIKQDTLQKEEASKPRNGGVLVPKTLRIDDPNEAAKSSIWATLGIKNESVNGGGMFKAFQSKKDEKSRVEASPVLMANPAALSRSLNFHENS | 469 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun3g04588 | 469 | ProSiteProfiles | Zinc finger Dof-type profile. | 120 | 174 | IPR003851 | GO:0003677|GO:0006355 | |
Viun3g04588 | 469 | MobiDBLite | consensus disorder prediction | 352 | 369 | - | - | |
Viun3g04588 | 469 | MobiDBLite | consensus disorder prediction | 66 | 88 | - | - | |
Viun3g04588 | 469 | MobiDBLite | consensus disorder prediction | 1 | 118 | - | - | |
Viun3g04588 | 469 | MobiDBLite | consensus disorder prediction | 352 | 376 | - | - | |
Viun3g04588 | 469 | MobiDBLite | consensus disorder prediction | 21 | 39 | - | - | |
Viun3g04588 | 469 | ProSitePatterns | Zinc finger Dof-type signature. | 122 | 158 | IPR003851 | GO:0003677|GO:0006355 | |
Viun3g04588 | 469 | MobiDBLite | consensus disorder prediction | 240 | 288 | - | - | |
Viun3g04588 | 469 | MobiDBLite | consensus disorder prediction | 240 | 259 | - | - | |
Viun3g04588 | 469 | MobiDBLite | consensus disorder prediction | 261 | 288 | - | - | |
Viun3g04588 | 469 | MobiDBLite | consensus disorder prediction | 89 | 118 | - | - | |
Viun3g04588 | 469 | Pfam | Dof domain, zinc finger | 117 | 174 | IPR003851 | GO:0003677|GO:0006355 | |
Viun3g04588 | 469 | PANTHER | CYCLIC DOF FACTOR 2 | 4 | 469 | IPR045174 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun3g04588 | Viun-Chr3 | 53486971 | 53490245 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun3g04588 | 1 | 467 | C2C2-Dof Transcription Factor Family | AT3G47500 | 49.491 | 3.34e-126 | 372 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Viun3g04588 | zf-Dof | 3e-32 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun3g04588 | - | - | gmx:778113 | 773.081 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun3g04588 | 3 | 53486971 | 53490245 | Viun3g04588 | 3 | 53486971 | 53490245 | ECH | |
Viun2g00976 | 2 | 20459203 | 20462827 | Viun3g04588 | 3 | 53486971 | 53490245 | ECH |