Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04587 ATGCACGAAATTAGAGATCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTCGACATAGAAGAAGAAGAGGAAGAAGATGAGAGTGGTGATGGAAAAGAGGAAGAGAAAGAAGAGGATAAGGATGCTGGAGTTGAAAATATTACTGAGGAAGAGCCAGAAGCTGATCTTTCCCCGAGTGCAGGAGAGACTAAAGATTCAGTTACATCCCCCGAGGCTATTGTGAACCCCAAAACACCCTCCATAGAAGAAGAAACAGCAACATCAAAAGCTGACAAATCAGAGAAGGAGCAAGGCGATGCGGCTAACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTACAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGCGGAATGTTCCTGTGGGGGCAGGGCGGCGGAAGAACAAGAACTCTGCCTCGCATTATCGCCACATCAGTATCTCTGAGGCCCTTCAAGCAGCCAGAATTGATTCGCCTAATGGAACTCATCTTTCAACTTTGAAAGGCAATGGTAGAGTTCTCAGCTTTGGATTAGATGCACATGCACCCATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGAGAAAAAGGTTCCCGATGGCACAAAAAACGGGTTTCATCATGGCTTTGAGGATCAAAGACTCCCAATTCCTCGCAAAAGTGGGGAAAATGGTGATGACTCTTCGACTACATCTTCCATTACAGTTTCAAATTCCATGGGAGAAAGTAGCAAAAGCACCTTCCAACCACAACCGGTGCTCCAACATCATGGTTTCCTTCCTCAGCTTCCGTGTGTTCCTTGGCCCTATACATGGAATTCTCCCGTTCCCCCACCTGCCTTGTGTCCTTCCGGATATGCCTTACCATTCTATCCTCCTGCTACATTCTGGAACTGTGGAATGCCAGGGAATTGGAATGTTCCATGGTTTTCTTCACTGTCATCTGCTTCAAACCCAAACTCTCCGGGCTCCGCTCCAAACTCTCCGACTTTGGGGAAGCACTCGCGGGACGGAGACATGATTAAGCAAGACACTTTGCAGAAAGAAGAAGCTTCAAAGCCAAGAAACGGGGGTGTTTTGGTTCCCAAAACGTTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTGAATGGGGGAGGTATGTTTAAGGCATTCCAATCAAAGAAGGACGAAAAGAGTCGCGTTGAAGCCTCTCCTGTGTTGATGGCTAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAGAACTCATGA 1410 0.4624 MHEIRDPAIRLFGQKIPFPEDVDIEEEEEEDESGDGKEEEKEEDKDAGVENITEEEPEADLSPSAGETKDSVTSPEAIVNPKTPSIEEETATSKADKSEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHISISEALQAARIDSPNGTHLSTLKGNGRVLSFGLDAHAPICDSMASVLNLGEKKVPDGTKNGFHHGFEDQRLPIPRKSGENGDDSSTTSSITVSNSMGESSKSTFQPQPVLQHHGFLPQLPCVPWPYTWNSPVPPPALCPSGYALPFYPPATFWNCGMPGNWNVPWFSSLSSASNPNSPGSAPNSPTLGKHSRDGDMIKQDTLQKEEASKPRNGGVLVPKTLRIDDPNEAAKSSIWATLGIKNESVNGGGMFKAFQSKKDEKSRVEASPVLMANPAALSRSLNFHENS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04587 469 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Viun3g04587 469 MobiDBLite consensus disorder prediction 352 369 - -
Viun3g04587 469 MobiDBLite consensus disorder prediction 66 88 - -
Viun3g04587 469 MobiDBLite consensus disorder prediction 1 118 - -
Viun3g04587 469 MobiDBLite consensus disorder prediction 352 376 - -
Viun3g04587 469 MobiDBLite consensus disorder prediction 21 39 - -
Viun3g04587 469 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Viun3g04587 469 MobiDBLite consensus disorder prediction 240 288 - -
Viun3g04587 469 MobiDBLite consensus disorder prediction 240 259 - -
Viun3g04587 469 MobiDBLite consensus disorder prediction 261 288 - -
Viun3g04587 469 MobiDBLite consensus disorder prediction 89 118 - -
Viun3g04587 469 Pfam Dof domain, zinc finger 117 174 IPR003851 GO:0003677|GO:0006355
Viun3g04587 469 PANTHER CYCLIC DOF FACTOR 2 4 469 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04587 Viun-Chr3 53486970 53490245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04587 1 467 C2C2-Dof Transcription Factor Family AT3G47500 49.491 3.34e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g04587 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04587 - - gmx:778113 773.081