Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g04422 ATGGGTTTTTCCTCTCTCCACGTCTGCATGAACTCATCAGATCAATGGCTGCAGGGCACAATTCACGAGGAGTGCGGGGTGGATTCTTCTTCACCATCTGCCGACATGCTTCCATGCTCGAGACCGATGACAGAGAGAAGGCTAAGACCCTCACAAGAGCAAGCCCTCAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCCAGGTATTTCTGCAAGACGTGTAGAAGGTACTGGACCAAAGGAGGCACTCTCAGGAACATTCCTGTTGGAGGAGGTTGCAGAAAGAACAAGAAAGTTTCAACTAAGAAACACAACGACCACCAACCAGCTATTAACGAAAACCAAACACAACCTGCAGGACCCTCTTATATTCATAATCACAAAGATCTTCAACATTCCTTCTTGGATGTGCAGTTTTCCCACCTCAATAATATACTTGGGACTAATGCTGGGGTACTGGGAAACCCTAGTTTCATGGAGAGTAAGTATAGCATGGGAATGCTAGAGAACCCTGGGCATATTGATTTCATGGAAAGTGGGTTGGACGGTATGAATATGAGTGTGGGTGGTGGTGTTGGGCTTGGTGATGTGAGTGGCTACAATGGATTGCCATTGAATTATCAAGGTCTTTCTAGTGCAGCATTTGGAGGCATGTCCCTTGATGGAGGCATTAGCAATGTTGGAAGTTATATAATGGACTCTTGCCAGAGACTTATGTTGCCCTATGATGGAGGTTATAACATCCTTAATGGTTCGGTTGATTTGAAGCCAAACCCTAAGCTGTTGTCCCTTGAATGGCAAGATCAGGGTTGTTCTGAGGCTGAAAAAGTGTCATTGGGATATCTTAATGGTTCAGGATCATGGAGCGGCTATGGATCTTCCACAACAAACCCTTTGGTGTAG 939 0.4569 MGFSSLHVCMNSSDQWLQGTIHEECGVDSSSPSADMLPCSRPMTERRLRPSQEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKHNDHQPAINENQTQPAGPSYIHNHKDLQHSFLDVQFSHLNNILGTNAGVLGNPSFMESKYSMGMLENPGHIDFMESGLDGMNMSVGGGVGLGDVSGYNGLPLNYQGLSSAAFGGMSLDGGISNVGSYIMDSCQRLMLPYDGGYNILNGSVDLKPNPKLLSLEWQDQGCSEAEKVSLGYLNGSGSWSGYGSSTTNPLV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g04422 312 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Viun3g04422 312 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 155 IPR045174 GO:0003700|GO:0006355
Viun3g04422 312 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Viun3g04422 312 MobiDBLite consensus disorder prediction 107 132 - -
Viun3g04422 312 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g04422 Viun-Chr3 52000185 52002084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g04422 1 283 C2C2-Dof Transcription Factor Family AT5G62940 40.964 6.47e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g04422 zf-Dof 2.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g04422 - - gmx:100815061 535.413