Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03877 ATGCTCCACCACAATAACTCAACCAGAGAAACCCTTCCTCATTCCCTTCATCAAGCAAAGCAACAGCATAGTAATATCATGATGGCCGTAAGCCGAAAGGACATGGACCGGATCAAGGGTCCATGGAGCCCGGAAGAGGACGAAGCCCTGCAGAAGCTGGTGGAGAGGCACGGGCCCAGAAACTGGTCGCTCATCAGCCGCTCAATCCCGGGCCGCTCTGGGAAATCGTGCAGGCTCCGATGGTGCAACCAGCTGTCACCCCAGGTCGAGCACCGGGCTTTCACACCCGAGGAAGACGACACGATTATCCGCGCTCACGCCCGCTTCGGTAACAAGTGGGCCACCATAGCCCGCCTTCTCTCGGGCCGCACCGATAACGCCATCAAAAACCACTGGAACTCAACGCTAAAGCGCAAGTGCTCATCCATCATGATGGCCGAAGATCCCGCCGCTGCCGCTGCCGGTTTCAGCCCGCAGCCACTCAAACGCTCCGTTAGCGCCGGCGCTGCGCTGCCCCCAGGAAGCCCATCTGGATCCGATGTGAGCGAGACCAGCGCCCCTGGCGTAGTCTCCCCATCGCACGTGTTCCGGCCCGTGCCGGTTCGACCCGTGGTCGAAACGGCGTCGTCGTGCGACGACGGTCCTACCACTTCGCTGTCACTGTCTCTCCCCGGCGTGGAGTCATCGGAAGCCTCGAATCGGGCGACGGCGATGCAAGCTAATCCCTTCACCATAGCACCGGTGAGCACCGTAGCGACTCCGGCGGCGGAGGTTGGAATGGGAGCTTTGAATTTGAGTGCGGAGTTTATGGCGGTGATGCACGAGATGATAAAGAAGGAGGTTCGGAGTTACATGGAGCAGCAGCAGCAGAGTGCGATGTGTTTTCAGGGTGTGGACGGTTTTAGGAACGTGTCGGTGAAGCGAATTGGGATTAGCAGGGTTGATTCCTAA 951 0.591 MLHHNNSTRETLPHSLHQAKQQHSNIMMAVSRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMMAEDPAAAAAGFSPQPLKRSVSAGAALPPGSPSGSDVSETSAPGVVSPSHVFRPVPVRPVVETASSCDDGPTTSLSLSLPGVESSEASNRATAMQANPFTIAPVSTVATPAAEVGMGALNLSAEFMAVMHEMIKKEVRSYMEQQQQSAMCFQGVDGFRNVSVKRIGISRVDS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03877 316 ProSiteProfiles Myb-like domain profile. 34 85 IPR001005 -
Viun3g03877 316 Gene3D - 38 90 - -
Viun3g03877 316 MobiDBLite consensus disorder prediction 163 193 - -
Viun3g03877 316 Gene3D - 92 153 - -
Viun3g03877 316 SMART sant 90 138 IPR001005 -
Viun3g03877 316 SMART sant 38 87 IPR001005 -
Viun3g03877 316 SUPERFAMILY Homeodomain-like 36 132 IPR009057 -
Viun3g03877 316 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Viun3g03877 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 89 IPR017930 -
Viun3g03877 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 140 IPR017930 -
Viun3g03877 316 CDD SANT 41 83 IPR001005 -
Viun3g03877 316 FunFam MYB transcription factor 39 90 - -
Viun3g03877 316 FunFam Transcription factor MYB44 93 139 - -
Viun3g03877 316 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g03877 316 PANTHER MYB PROTEIN-RELATED 39 227 - -
Viun3g03877 316 Pfam Myb-like DNA-binding domain 42 100 - -
Viun3g03877 316 CDD SANT 93 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03877 Viun-Chr3 46183431 46184894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03877 31 315 MYB Transcription Factor Family AT4G37260 51.235 3.36e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g03877 Myb_DNA-bind_6 3.4e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02153 2 29511140 29513195 Viun3g03877 3 46183431 46184894 ECH
Viun9g03432 9 40558502 40559578 Viun3g03877 3 46183431 46184894 ECH
Viun8g00381 8 2536665 2538461 Viun3g03877 3 46183431 46184894 ECH
Viun3g03877 3 46183431 46184894 Viun3g03877 3 46183431 46184894 ECH
Viun3g03877 3 46183431 46184894 Viun2g02153 2 29511140 29513195 PCT