Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03874 ATGGCTCTCGGAGACGATGCACAGCACCACTCTCCCTCGATCCTCGATGCCCTTCTCTGCGAAGAGCGTGAAACCTTTGAGGAAGATTTGGATGCGAACGGCGCTGAGTGTGAGATCAACGACGATGACCCATCTGGGAGAAAGTTGCAATCTTTGCCTTTGGCTTTACTTCAGAATGATCTGTTCTGGGAAGATGAAGAGCTTGTGTCTTTAATCTCGAAAGAGGGAGAGACCCATTCGTGTTCTCTTAGTGCCATTGCTGATGGGCCCTTAGAAGGGTCTCGTGTGGAGGCTGTGAACTGGATTTCAAAAGTCTGCGGACATTATGGGTTTTCTGCTTTGACCACTGTTCTTGCCGTCAACTACTTTGATCGCTTCATCCCATGCCTGAGGTTTCACAGGGACAAGCCGTGGATGACACAGCTCACTGCTGTTGCTTGTTTGTCCCTTGCTGCAAAAACGGAAGAGACCCATGTGCCGCTCCTTTTGGACCTTCAAGTGGAGGAATCGAGGTTTGTGTTTGAGGCGAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCAACTCTTAAATGGAGGATGCATCCTGTGACTCCAATTTCTTTCTTTGAACACATTGTCAGAAGGCTTGGTTTGAAGAGTCGCTTGCATTGGGAGTTTCTATGGCGTTGTGAGCGGGTTCTTCTCAATGTCACTGCGGATTCAAGGGCTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACCATGATCCATGTTATTAAAGAGATTGAATCATTTAACGCTACAAAGTACATTGATCAGCTTCTTGGTTTACTAAAGATTAGCGAGGAACAAGTGAACCAGTGCTACAAGCTCATGCAGAAAATATTAGGTCGCTATGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCGTCTAACTGAACCAAGTAGCCCAGGTGGTATCCTTGATTCAACTTTCAGCTGTGATAGCTCAAATGATTCGTGGGCATTGTCATCATCAGTCTCACTTTCACTGGAGCCGCTGTTTAAGAGGAGAAGACCTCAGGACCAGCAAATGCGACTCCCTTCTGTTAGTCGCGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1116 0.4677 MALGDDAQHHSPSILDALLCEERETFEEDLDANGAECEINDDDPSGRKLQSLPLALLQNDLFWEDEELVSLISKEGETHSCSLSAIADGPLEGSRVEAVNWISKVCGHYGFSALTTVLAVNYFDRFIPCLRFHRDKPWMTQLTAVACLSLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVTADSRAMSYLPSTLAAATMIHVIKEIESFNATKYIDQLLGLLKISEEQVNQCYKLMQKILGRYEGIYSLHQKRKRLTEPSSPGGILDSTFSCDSSNDSWALSSSVSLSLEPLFKRRRPQDQQMRLPSVSRVSIDVLNSPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03874 371 SMART cyclin_7 100 188 IPR013763 -
Viun3g03874 371 Gene3D - 93 195 - -
Viun3g03874 371 SMART Cyclin_C_2 197 310 IPR004367 -
Viun3g03874 371 FunFam CYCLIN D32 196 285 - -
Viun3g03874 371 CDD CYCLIN_AtCycD-like_rpt1 95 192 - -
Viun3g03874 371 SUPERFAMILY Cyclin-like 62 195 IPR036915 -
Viun3g03874 371 SUPERFAMILY Cyclin-like 179 292 IPR036915 -
Viun3g03874 371 Gene3D - 196 285 - -
Viun3g03874 371 PANTHER CYCLINS 83 292 IPR039361 -
Viun3g03874 371 Pfam Cyclin, C-terminal domain 197 294 IPR004367 -
Viun3g03874 371 Pfam Cyclin, N-terminal domain 94 194 IPR006671 -
Viun3g03874 371 FunFam D3-type cyclin 88 195 - -
Viun3g03874 371 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03874 Viun-Chr3 46115251 46117147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03874 7 361 Core Cell Cycle Gene Families AT5G67260 51.240 2.61e-111 329
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02147 2 29486686 29488503 Viun3g03874 3 46115251 46117147 ECH
Viun9g03435 9 40592304 40594291 Viun3g03874 3 46115251 46117147 ECH
Viun8g00377 8 2484258 2486119 Viun3g03874 3 46115251 46117147 ECH
Viun3g03874 3 46115251 46117147 Viun3g03874 3 46115251 46117147 ECH
Viun3g03874 3 46115251 46117147 Viun2g02147 2 29486686 29488503 PCT