Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03870 ATGTCTTCAATGGCCATAGTACCCACCTTGCTCTTCCTTTTCTTCACTTTCTCACATGTTACGGCCATGTCCGTCGTCAATTACTCCGAAAACGAGGTGATGGACATGTACGAGAAGTGGTTGGTGAAGCACCGAAAGGTGTACAATGGGTTGGGAGAGAAGGATAAGAGGTTTGAAGTGTTCAAGGAGAACTTGGGATTCATACAAGAGCACAACGCTCAGAACAACACATACACTCTTGGGTTGAACAAGTTTGCTGATATCACCAACGAGGAATACCGTGCCATGTATTTGGGCACCAGAACTGATGCCAAACGCAGGGTCATGAAAACCCAGAGGACCGGTCACCGGTATGCTTACAACTCCGGTGACAAGTTGCCGGTGTTCGTCGATTGGAGGTTGAAAGGTGCAGTTGCTCCGATCAAAGATCAGGGAAGTTGTGGAAGTTGTTGGGCGTTCTCAACAGTGGCTTCTGTGGAAGCTATAAATAACATAGTGACAGGGAAGTTTGTGTCACTGTCAGAACAAGAGCTTGTGGACTGTGACAGAGAGTATAACGAAGGATGCAATGGTGGCCTCATGGACTACGCATTCCAATTCATCATTAAAAATGGTGGCATAGACACAGAAGAAGATTATCCATACAAGGGCCATGATGGAACTTGTGATCCAACTAAGAAAAAGGCCAAGGTAGTGCAAATCGATGATTACGAGGATGTTCCAGCATATGACGAGAATGCCTTAAAGAAAGCTGTTTCTCATCAACCCATAAGCGTTGCAATTGAAGCCTCTGGCAGGGCTTTGCAACTTTATCAGTCTGGTGTGTTTACTGGTAAATGTGGAACAAATTTAGATCATGGTGTGGTGGTTGTTGGATATGGGACTGAAAACGGTGTTGATTACTGGCTGGTGAGGAATTCATGGGGCACTGGGTGGGGTGAAGATGGGTATTTCAAGATGGAGCGCAACGTGAGAAGGAGCTCCACAGGGAAGTGTGGAATTGCAATGGAAGCTTCGTACCCTGTTAAGTATGGTCTAAACTCTGCAGTTCCTAGTTCAGGTTATGAAAGCAATGAGGTCTCTATCAGCAGTGCTTGA 1098 0.459 MSSMAIVPTLLFLFFTFSHVTAMSVVNYSENEVMDMYEKWLVKHRKVYNGLGEKDKRFEVFKENLGFIQEHNAQNNTYTLGLNKFADITNEEYRAMYLGTRTDAKRRVMKTQRTGHRYAYNSGDKLPVFVDWRLKGAVAPIKDQGSCGSCWAFSTVASVEAINNIVTGKFVSLSEQELVDCDREYNEGCNGGLMDYAFQFIIKNGGIDTEEDYPYKGHDGTCDPTKKKAKVVQIDDYEDVPAYDENALKKAVSHQPISVAIEASGRALQLYQSGVFTGKCGTNLDHGVVVVGYGTENGVDYWLVRNSWGTGWGEDGYFKMERNVRRSSTGKCGIAMEASYPVKYGLNSAVPSSGYESNEVSISSA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03870 365 Pfam Cathepsin propeptide inhibitor domain (I29) 37 93 IPR013201 -
Viun3g03870 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 144 155 IPR000169 -
Viun3g03870 365 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 29 341 IPR013128 GO:0008234
Viun3g03870 365 SMART pept_c1 126 342 IPR000668 GO:0006508|GO:0008234
Viun3g03870 365 Pfam Papain family cysteine protease 127 342 IPR000668 GO:0006508|GO:0008234
Viun3g03870 365 SMART Inhibitor_I29_2 37 93 IPR013201 -
Viun3g03870 365 CDD Peptidase_C1A 127 341 IPR039417 -
Viun3g03870 365 FunFam Cysteine protease 1 18 344 - -
Viun3g03870 365 PRINTS Papain cysteine protease (C1) family signature 144 159 IPR000668 GO:0006508|GO:0008234
Viun3g03870 365 PRINTS Papain cysteine protease (C1) family signature 301 307 IPR000668 GO:0006508|GO:0008234
Viun3g03870 365 PRINTS Papain cysteine protease (C1) family signature 286 296 IPR000668 GO:0006508|GO:0008234
Viun3g03870 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 284 294 IPR025660 -
Viun3g03870 365 SUPERFAMILY Cysteine proteinases 29 342 IPR038765 -
Viun3g03870 365 Gene3D Cysteine proteinases 18 344 - -
Viun3g03870 365 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 301 320 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03870 Viun-Chr3 46067768 46070189 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03440 9 40629079 40632231 Viun3g03870 3 46067768 46070189 ECH
Viun8g00371 8 2428537 2432072 Viun3g03870 3 46067768 46070189 ECH
Viun3g03870 3 46067768 46070189 Viun3g03870 3 46067768 46070189 ECH