Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03767 ATGATCCAGGAACTGTTGGGTGGAGCTAGCCTCATAGCACCAGAAAGAAAACCCTCCATTAATGGAGGGGGTGCAGCAGGAGGAGGAGGAGGGGTTTTACTCCCGACTGCACCGTCTCCCTCTTCTCTTCCTTCTTCCGCAACTAATAATGTTACCCTCACATCCACCACCACCACAACAACTACTACTACCACCACCACTACTCCCACATCGGAAAACCAAAACCTCAGGTGCCCGCGGTGCGACTCATCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCCCGCCACTTTTGCAAGACGTGCCGCCGCTACTGGACCAAAGGTGGCGCTCTCCGCAACGTTCCCATCGGCGGTGGCTGCCGGAAAAACAAAAATATTGGCGTGGCCAACTCAGTGGCAAAGACAGCCTCAACCAAGATGAAAGCCGTTGCATCTGAGCTTGGAAAATCACCAGGTTTCGGTGGCTTTGAAGTTGAACACGAGCTTCCACCACCGAGCCAAATCCTTTGGGGTTCCCCCCAAAACACCCACCTGCTGGCTCTTCTGAGAGCTACTCAGAATCAAAACCCTAACCCTAACCCTAGTCACATGTCCATCAAGGAAGAAGGGACCCTGATAGGGCACATGGTGAGCACTGAGCCCTTGGTTTCGAATGCGTTGCTGAATCACCGAACCTTAGGCTATGATGCGGTTGCGCAAGTTCCTTCGCTTGGGCTGTTTGGGAGAAGCAATCAAGATCAACAACAAAATGGGGGGTTCCTACTTGGGGAACATCACAACAGTGGAATTCAAGAGCTTTACCAGAAGCTAAGGTCGTCATCGGCTAATAATTATTGCGGTGATAACTCGTCACAAGTGTTTATGGGGAACATGGCTTCTAATTATTCCTCTTCTGTGTCCAACAACATTATGGAAACAACTTCGGTAGCTGGGGGTGAATTCGGATACTGGAACGGTCCAACCTTTTCGTGGTCTGATCTTCCAACAACGAATGGCGCTGGTGCATATCCGTAA 1029 0.5063 MIQELLGGASLIAPERKPSINGGGAAGGGGGVLLPTAPSPSSLPSSATNNVTLTSTTTTTTTTTTTTTPTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVAKTASTKMKAVASELGKSPGFGGFEVEHELPPPSQILWGSPQNTHLLALLRATQNQNPNPNPSHMSIKEEGTLIGHMVSTEPLVSNALLNHRTLGYDAVAQVPSLGLFGRSNQDQQQNGGFLLGEHHNSGIQELYQKLRSSSANNYCGDNSSQVFMGNMASNYSSSVSNNIMETTSVAGGEFGYWNGPTFSWSDLPTTNGAGAYP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03767 342 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Viun3g03767 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 65 276 IPR045174 GO:0003700|GO:0006355
Viun3g03767 342 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Viun3g03767 342 MobiDBLite consensus disorder prediction 14 76 - -
Viun3g03767 342 MobiDBLite consensus disorder prediction 38 76 - -
Viun3g03767 342 Pfam Dof domain, zinc finger 74 130 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03767 Viun-Chr3 44825755 44827328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03767 45 161 C2C2-Dof Transcription Factor Family AT5G60200 52.500 2.86e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g03767 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03767 - - gmx:778108 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02068 2 28927464 28929046 Viun3g03767 3 44825755 44827328 PCT