Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03156 ATGGTACCACCAGAAGGCATGCCACCAACACCGAACGAGCATGAGGTCACTGAGGGCCGCAAAACGACGAGGCCGCCACCGGAGCAAGGTGTGAAGTGCCCGAGATGTGACTCACCAAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACTCAGCCCAGGCACTTCTGCAAGACCTGCAGAAGGTACTGGACCAACGGGGGTGCCTTGCGCAACGTCCCAATAGGAGGGGGTTGCAGGAAGAACAAAAAGGTGAAACCTTCTTCCTCCGCTTCACCCTCCTCCAGACTCTCCTGTGACCCCAAAGACTTCAATTTTCATGGTCTCACAGTTCCACCTTCCGTTGACTTCAACCTGGGAGGGATACCCTTTCCCCCCAGGCTCACTGCTTTCAACACTCAAAACCTCCCAACACCCCCCACTGGGGTCTTCAACCAGTTCTCTTCTTTTGGGGACGTGGCATCGTCTTCCACCACTTCCCTTTCTGCTTTGTCTGCCTTCCAGCTTGACCCCCCTGCTGCTGCTGCTGCTGCTGTTTCAAACCCTCTCTTGGGTCTTGTTCCGCCCAACCCTGACCTCTGGGCTCTACGTAGGTCAGAGAGGGCCTCACTCTCTGATCCTTTGAACAGTGCAATGCAAACCCTGCAGACCATGGAAGCCATGAACGTTCACGGCAGCCTTGCCTCTTCAATTGAGTCGCTCAGCAACATCAACCAGGACTTGCACCTGAAGCTGCAGCAGCAGCGCATGGCGACAATGATGTTCGGTGGGGACAGCCAGAAAGGTGAGAGCAGCGTTGCGCTGAATGGGTTTGGGAATCAGAAGCTGCTACAACCGGTTTCGTTTCAGAACCTTGCGATTTCGAAGCCAGAGAACTTGCCAGCTGGCAGTTCCATAAATGGTGGTCCAAGTGGGGAGACAGTTACTGCAGCACCCACTGAATGGTTCTTTGGGAATTCCTTTCCCTCAGTGTCTCCTTCAACCAGCAATGGTGGTGCCAATGTTAACCACATTAGCAACGATGCAAACAACAACAACAACAACTGGACCGGTGCCCTTGCCTGGGGTGATTTGCCGCACCAACCATACACCGCTTTGCCCTAG 1107 0.5411 MVPPEGMPPTPNEHEVTEGRKTTRPPPEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKPSSSASPSSRLSCDPKDFNFHGLTVPPSVDFNLGGIPFPPRLTAFNTQNLPTPPTGVFNQFSSFGDVASSSTTSLSALSAFQLDPPAAAAAAVSNPLLGLVPPNPDLWALRRSERASLSDPLNSAMQTLQTMEAMNVHGSLASSIESLSNINQDLHLKLQQQRMATMMFGGDSQKGESSVALNGFGNQKLLQPVSFQNLAISKPENLPAGSSINGGPSGETVTAAPTEWFFGNSFPSVSPSTSNGGANVNHISNDANNNNNNWTGALAWGDLPHQPYTALP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03156 368 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Viun3g03156 368 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Viun3g03156 368 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 249 IPR045174 GO:0003700|GO:0006355
Viun3g03156 368 Pfam Dof domain, zinc finger 30 85 IPR003851 GO:0003677|GO:0006355
Viun3g03156 368 MobiDBLite consensus disorder prediction 1 32 - -
Viun3g03156 368 MobiDBLite consensus disorder prediction 76 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03156 Viun-Chr3 37933436 37935213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03156 13 368 C2C2-Dof Transcription Factor Family AT5G65590 33.687 4.62e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g03156 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03156 - - ccaj:109819084 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01353 2 24158212 24160050 Viun3g03156 3 37933436 37935213 PCT