Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03101 ATGGCTTTAGAAACTCTTCCATCCAACGAGTTTTCCAACTTCATCGTCTACGACACTATCTCTGCAACTCCATTTAGCAGCCATGACTCTTCAGAGACTAGTTTCTTGGAAAGTTTTGTGAACTGTCAGGAACACAACCCTTCATTGAATGATAGCTCAATGAGGACCCGAAAGCGCCAAGCCAGCGAGCCACCAGAAGCCATCGGCAGCAGGAAGCAGAATGTGGCGGGGGTGCAAGGTAGGAAGAAGAGGAGAAGAAGGCCAAGGGTTTGCAAAAACAAGGAAGAGGCCGAGACACAAAGAATCACTCACATTACAGTGGAAAGAAACCGCCGAAAGCAGATGAATGAGCATCTTGCTGTTCTTCGTTCACTCATGCCTGAGTCCTACGTCCAGAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCCTGCAAACACTGGAAGCAAGAAAGCTGCAACTTTTGCAGCAAGAAGCGGTGCAAACCAATGAAAATACGGCCATTTCCAAACTCATGCAACCCCCTTTTGCACAATTTTTTTTGTATCCTCAGTACACATGGTCCCAGAGTCCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTCACTCTAATCGAGACCCATGCAAATCTTCGAATTCTCACTAGGAAAAGCCCCGTCCAACTAACCAAGTTAGTATCTGGTTTCCAAACTCTCTACCTCACTGTCCTACATCTTAATGTCACCACCATAGACCCTTTGGTCTTCTATTCCATCAGTGCTAAGGTTGAAGAAGGATTCCAACTTGGTTCGGTAGATGGTATTGCATCGGCAGTTCATCATTTGCTTGCAAGAATCGAAGATGAGGCTTTGCTTTGCTGTTGA 909 0.4664 MALETLPSNEFSNFIVYDTISATPFSSHDSSETSFLESFVNCQEHNPSLNDSSMRTRKRQASEPPEAIGSRKQNVAGVQGRKKRRRRPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQTLEARKLQLLQQEAVQTNENTAISKLMQPPFAQFFLYPQYTWSQSPNKYTSKTKAAIADIEVTLIETHANLRILTRKSPVQLTKLVSGFQTLYLTVLHLNVTTIDPLVFYSISAKVEEGFQLGSVDGIASAVHHLLARIEDEALLCC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03101 302 Coils Coil 147 167 - -
Viun3g03101 302 PANTHER MAX DIMERIZATION, MAD 44 298 - -
Viun3g03101 302 MobiDBLite consensus disorder prediction 45 97 - -
Viun3g03101 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 99 150 IPR011598 GO:0046983
Viun3g03101 302 Gene3D - 91 168 IPR036638 GO:0046983
Viun3g03101 302 SMART finulus 105 156 IPR011598 GO:0046983
Viun3g03101 302 Pfam Helix-loop-helix DNA-binding domain 100 151 IPR011598 GO:0046983
Viun3g03101 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 169 IPR036638 GO:0046983
Viun3g03101 302 CDD bHLH_AtFAMA_like 102 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03101 Viun-Chr3 37286436 37288644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03101 91 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 56.593 1.55e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g03101 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03101 - - pvu:PHAVU_003G284500g 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g03101 3 37286436 37288644 Viun3g03101 3 37286436 37288644 ECH