Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02851 ATGTCAGAGGTTAAAGGCTCTGCCATAAAGCTCTTTGGAAGGACGATTTCTCTGCCACACAATGATTCTTCTGCACCTGCGACTCTCGCTTCTCCTTCATCTCCCTCTTCTCCCCCGGAACTTACCTCTGCAACACAACAACACCAAGAACACCAGGAAGCACTAAGGAAAGAACTTACCTCACTTGAAGACGATGGTGCCTCGTCACACCAAACAACAGAGGATTTAAAATCTGCCGCTTCAGACATACTCGAGAATCCTAAGACTCCCTCAGCGGAAACAGAGACATCACTGCAGAAATCGCCCGAAAATGAAGAACAGAGCGAGACAAGTGCTTCTGAAGAAAAAACACCAAAGAAACCTGACAAGATACTTCCATGTCCGCGGTGCAATAGCATGGACACTAAATTCTGCTACTACAACAACTACAACGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCAGGAGGAACAATGAGGAATGTGCCCGTGGGTGCTGGTCGCAGGAAAAACAAGAACACTTCGGCTGCAGCTGTGTCACATTACCGACAGATAGTGTTCCCGGAGCCACTTCAAGGAGCTACACTCAGTGCCTCCAATGGACTGCATAATGCCCTTCTGGGGAACAGAGCAACTGTGTTGAGTTTTGGTCCTGATACCCCTCTCTGTGACACCATGAGTTCTGTGTTGAACATTGCTGAGCGGGCCCAAAGCTGTGTATCAAATGGGTTTCATGCAACTGAGCGAAATGGCTCTGTTTCCTATAGTAAGGAGGGTGATGCGGGTGCTCATTCTGCTGCAGTTTCTGTTTCAACAACTTCAAATTCAAGCCATGCTAGCTCACATGAATCAGTTGATAAAAGAGTTGAAGGTTTCCCTCCTCAGTTATCATACTTCGCAGGTGCCCCTTGGCCTTATCCTATGCCTCCTCCTACATTTTGCCAACCTAGGTACCCTTTATCATTCTATACTACACCACCATATTGGAGTTGTATGCAACCCTCTTGGAATATCTCATGTATGTCACCCCAATCTTCTGTCAGCAACTCTGTCTCTGCCCCCATTTTAGGGAAACACTCAAGGAATGGGAACATCATCACCCCATTCAACTCACAGAAAGAAATACGTGATGTGGAACATAACAGTTCAGAGCACAATTTCTTGATTCCCAAGACTCTTAGAATCGATGACCCTGGTGAAGCTGCAAAGAGTTCCATGTGGTCAAAACTAGGAACCAAGAATGACAGAGCCAGTTCTGGAGGCCTTTTCCAAGCTTTTCCACCCAAGGGAAATGACATGAATCACAGGGTTGAAGCATCACCCCAGTTGCAAGCCAACCCTGCTGCTCTATCGCGCTCTCTTACCTTCCATGAACACACCTGA 1401 0.4704 MSEVKGSAIKLFGRTISLPHNDSSAPATLASPSSPSSPPELTSATQQHQEHQEALRKELTSLEDDGASSHQTTEDLKSAASDILENPKTPSAETETSLQKSPENEEQSETSASEEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTSAAAVSHYRQIVFPEPLQGATLSASNGLHNALLGNRATVLSFGPDTPLCDTMSSVLNIAERAQSCVSNGFHATERNGSVSYSKEGDAGAHSAAVSVSTTSNSSHASSHESVDKRVEGFPPQLSYFAGAPWPYPMPPPTFCQPRYPLSFYTTPPYWSCMQPSWNISCMSPQSSVSNSVSAPILGKHSRNGNIITPFNSQKEIRDVEHNSSEHNFLIPKTLRIDDPGEAAKSSMWSKLGTKNDRASSGGLFQAFPPKGNDMNHRVEASPQLQANPAALSRSLTFHEHT 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02851 466 MobiDBLite consensus disorder prediction 16 125 - -
Viun3g02851 466 Coils Coil 45 65 - -
Viun3g02851 466 MobiDBLite consensus disorder prediction 99 123 - -
Viun3g02851 466 PANTHER CYCLIC DOF FACTOR 2 1 465 IPR045174 GO:0003700|GO:0006355
Viun3g02851 466 MobiDBLite consensus disorder prediction 50 71 - -
Viun3g02851 466 MobiDBLite consensus disorder prediction 446 466 - -
Viun3g02851 466 MobiDBLite consensus disorder prediction 17 49 - -
Viun3g02851 466 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Viun3g02851 466 MobiDBLite consensus disorder prediction 272 286 - -
Viun3g02851 466 MobiDBLite consensus disorder prediction 270 293 - -
Viun3g02851 466 MobiDBLite consensus disorder prediction 72 98 - -
Viun3g02851 466 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Viun3g02851 466 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02851 Viun-Chr3 33861144 33864199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02851 8 464 C2C2-Dof Transcription Factor Family AT5G39660 37.654 2.18e-79 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g02851 zf-Dof 3.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02851 - - gmx:100813315 657.907