Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02072 ATGGTTTTTCCAAGACCTCCTTCTGAGTCTGACCTCTTTCTTCATTCCAACTTTGCTTCTCGCTATGCAAGAGACTCTCTTCCCAGGTTCAGCATGCCTGAAGACTCCATGCCAAAGGAGGCTGCCTACCAGAACATTCACGATGAGTTGCAACTTGATGCCATTCCAAAGCTTAACTTGGCTTCCTTTGTCACCACATCCATGGAGGAAGAGTGCAACAAACTCATCATGGAATCCATCAACAAGAACTATGTTGACATGGATGAGTATCCTATCACCACTGACCTTCACAATCGGTGTGTTAACATGATAGCACGTTTGTTCCATGCTGATATTGGAGAAGATGAGAATGCTATTGGAGCAGGAACAGTTGGCTCATCAGAGGCCATAATGCTGGCAGGGCTTGCATTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCAGAAGGCAAGCCTTATGATAAGCCTAATTTGGTGACTGGCTCCAATGTGCAAGTATGTTGGGAGAAATTTGCCAGGTATTTTGAGGTGGAGTTGAGGGAAGTGGAGGTGAGGGAAGGCTACTACGTGATGGATCCTGCGAAAGCAGTTGAGCTGGTTGATGAGAACACTATTTGTGTGGCTGCAATATTGGGGTCAACTTACAACGGAGAGTTTGAAGATGTGAAGCTCTTGAATGACTTGCTGCTTCAAAAGAACAAGCAAAGTGGATGGGATACACCAATTCATGTGGATGCTGCAAGTGGTGGTTTCATTGCTCCTTTCCTTTATCCAGAGCTGGAGTGGGATTTCAGGCTGGCATTGGTGAAGAGCATAAATGTGAGTGGACACAAGTATGGTCTTGTTTATGCTGGTATTGGTTGGGTTATTTGGAGGACAAAGGACGACTTACCCGAAGACCTTGTGTTTCATATCAACTACCTTGGAGCTGACCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAACTAATTCGTCTTGGCCAAGAGGGTTACCTGAGCATAATGGAGAACTGCAGAGAAAACGCAATGGTGTTAAAGGAAGATTTGGAGAAGAGTGGGCACTTTAACATACTCTCAAAAGACAATGGTGTTCCTGTGGTGGCATTTTCTCTGAAAGACAGAAGGCAGTACGATGAGTACAAGATATCAGAGATGCTGCGGCGCCACGGTTGGATAGTGCCAGCTTATCCAATGCCACCTGCTGCTCAGCACGTCATTGTGCTCCGTGTGGTTATCAGGGCTGAGTTTTCACGTACTCTTGCTGAGCGCCTTGCGTTTGACATACACAATGTGCTGCATGAGCTTGAAAAGTTGCCTCCCCCCACAATGATGAATAACATTGAGGAAGAGAACAAGGACTTGGTTGATAATGGAGTTAAGGAAACTACATTGGACGCACACAGAGCCATTATTGTTCAAGAATCAAACAAGCGCCAGAAAGTTATGGCTGCCTAG 1482 0.4568 MVFPRPPSESDLFLHSNFASRYARDSLPRFSMPEDSMPKEAAYQNIHDELQLDAIPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPITTDLHNRCVNMIARLFHADIGEDENAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNLVTGSNVQVCWEKFARYFEVELREVEVREGYYVMDPAKAVELVDENTICVAAILGSTYNGEFEDVKLLNDLLLQKNKQSGWDTPIHVDAASGGFIAPFLYPELEWDFRLALVKSINVSGHKYGLVYAGIGWVIWRTKDDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYLSIMENCRENAMVLKEDLEKSGHFNILSKDNGVPVVAFSLKDRRQYDEYKISEMLRRHGWIVPAYPMPPAAQHVIVLRVVIRAEFSRTLAERLAFDIHNVLHELEKLPPPTMMNNIEEENKDLVDNGVKETTLDAHRAIIVQESNKRQKVMAA 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02072 493 PANTHER GLUTAMATE DECARBOXYLASE 10 482 IPR010107 GO:0004351|GO:0006536|GO:0030170
Viun3g02072 493 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Viun3g02072 493 SUPERFAMILY PLP-dependent transferases 16 446 IPR015424 -
Viun3g02072 493 Gene3D - 1 65 - -
Viun3g02072 493 FunFam Glutamate decarboxylase 66 360 - -
Viun3g02072 493 FunFam Glutamate decarboxylase 361 448 - -
Viun3g02072 493 FunFam Glutamate decarboxylase 5 65 - -
Viun3g02072 493 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Viun3g02072 493 Gene3D - 66 360 IPR015421 GO:0003824
Viun3g02072 493 Gene3D - 361 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02072 Viun-Chr3 16733164 16735270 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02072 1 481 Calmodulin-binding Proteins AT5G17330 74.280 0.0 758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02072 3 16733164 16735270 Viun3g02072 3 16733164 16735270 ECH