Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02020 ATGGGGTTTGTTTGGATGGCGAGGGTTGTAGCGGTGCTTGCAATCGCGGCGGTGGCGAGCGTAGAGGCCCAACCGGAGGCGAAATTCGTGTGCAACAGCGCGAACAACTCCAGGTGTGGGGCCCTCATAGGGTACTCTCACACGAACGGCACCACCCTTGGCCACATCCAAACCCTGTTCAACGTGAAGAAACTTGTGGATATCCTAGGCGCCAACAACCTCCCGAGCAACACCACAAAGAGCCACGTGGTGGAGGCCAACGAGGTTGTGAAGGTGCCGTTCCCGTGCAGGTGCAGCAACAGGACGGGACTCTCGGACGGGGTTCCGCTTTATAAGATAAAAAAGGGGGACACGCTGTACGACATAGCGACGACGACGTTTGGGGGTTTGGTGAAGTATCCGCAGATCACGGCGGCGAATAAGTTACCGGACGAGAATAACATCACCACCGGGGACACGCTTTATATTCCGCTGCCGTGTAGCTGCGATGTGGTGGATGGGAGCAGAGTGGTGCACTTTGCGCACCTGGTAGTGCCACAGAGCACGGTGGAGGGAATTGCTGAGCAATTTGGCACCACTGAGCAGATCCTCCTCAATCTCAATGGCATTTCCGACCCCAAAACGCTTCAGGCCGGTCAGATTCTTGATGTTCCTCTTCGAGCTTGTTCGTCGAGTGTGAAAAATGATTCCTTGGACTATCCATTGCTTGTTGCAAATTCTTCTTACGCCTATACTGCAAACGAATGCGTGAAATGCAGTTGTGACCCCAGCAACAACTACATATTACAATGCGAACAATCCCACCTCAAACCTACCAACTGGTCCATTTGCCCTTCTGCGCAATGCTCAAGCAACGTCTTCATTGGCAACACCACTTCCTCTACAGATTCCTGCAACCGCACAGTCTGTGCCTATACTGGTTTTACATTCAACAATATCTCAGCAGAACTTGTAACGCAGAACACTTGTGCAGTGCCACCGGGTCCTTCAGGAGGATCTAGTGGTTCTGGTTCTGGTTCAGGAGCGCCCAGGAGCACTTTGCAAGGCTTGCTTTGGAGTAATCTTTTCGTTGTTGTTCACTTTGTTCTCCTTCTTGTCTATGTTTTGTAG 1110 0.5198 MGFVWMARVVAVLAIAAVASVEAQPEAKFVCNSANNSRCGALIGYSHTNGTTLGHIQTLFNVKKLVDILGANNLPSNTTKSHVVEANEVVKVPFPCRCSNRTGLSDGVPLYKIKKGDTLYDIATTTFGGLVKYPQITAANKLPDENNITTGDTLYIPLPCSCDVVDGSRVVHFAHLVVPQSTVEGIAEQFGTTEQILLNLNGISDPKTLQAGQILDVPLRACSSSVKNDSLDYPLLVANSSYAYTANECVKCSCDPSNNYILQCEQSHLKPTNWSICPSAQCSSNVFIGNTTSSTDSCNRTVCAYTGFTFNNISAELVTQNTCAVPPGPSGGSSGSGSGSGAPRSTLQGLLWSNLFVVVHFVLLLVYVL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02020 369 CDD LysM 111 156 IPR018392 -
Viun3g02020 369 Pfam LysM domain 177 218 IPR018392 -
Viun3g02020 369 Pfam LysM domain 111 157 IPR018392 -
Viun3g02020 369 SUPERFAMILY LysM domain 110 158 IPR036779 -
Viun3g02020 369 SUPERFAMILY LysM domain 173 218 IPR036779 -
Viun3g02020 369 Gene3D LysM domain 110 164 IPR036779 -
Viun3g02020 369 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 7 325 - -
Viun3g02020 369 ProSiteProfiles LysM domain profile. 173 217 IPR018392 -
Viun3g02020 369 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Viun3g02020 369 CDD LysM 175 217 IPR018392 -
Viun3g02020 369 Gene3D LysM domain 168 230 IPR036779 -
Viun3g02020 369 SMART LysM_2 110 157 IPR018392 -
Viun3g02020 369 SMART LysM_2 174 218 IPR018392 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02020 12 313 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 47.368 5.84e-88 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02020 - - gmx:100804190 518.464