Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02005 ATGGCGCCGAGCACCGGAGACCTCCAACTAACTTCCGCCGGCGCCGGCAAAGATTCCGACGAACTCGAAGATGTTCGCCTCCTCGATTCCTACGAACAACTCTACATCGAACACGATGAAACGAAGCGGATTCAGGTTAGAATCACCGGCATGACCTGCGCCGCGTGTTCCAACTCCGTCGAAACCGCTCTCAGGTCCGTTAACGGCGTAACAGAGGCTTCCGTTGCTCTTCTTCAAAACAAAGCTGACGTCATTTTCAATCCAAGCCTCGTCAAGGATGACGACATTAAGAATGCGATTGAAGACGCAGGTTTTGAGGCGGAGATCTTGCAGGAGTCCGGTCCGGCGGACCGCGTGGTGGGGCAGTTCACGATCGGCGGGATGACCTGTGCGGCTTGTGTGAATTCTGTTGAGGGCATTTTGAGGAGGCTTAATGGAGTGAAAAGAGTGGTGGTGGCTTTGGCTACTTCATTGGGGGAGGTCGAGTATGATCCCAATGTGATTAGCAAAGATGATATTGTGGCGGCCATTGAAGACGCTGGTTTCGAGGGTTCGTTTGTGCAGAGTAATGGGCAGGATCAGGTTGTGTTGGGGGTTGGTGGTGTCTACTCTCTGGCTGATGCTCAGGTTTTGGAAGGGATGCTCAGTGGCACTAAAGGGGTGAGGCAGTTTCGGTTTGACCCGGTGTTGAATGAGCTTGATGTGGTTTATGACCCTGAAGTTATTAGTTCGAGGTCATTGGTTGATGGGATCCAGTTGGGAAGTAATGGTAAGTTTAGATTGCATGTTAGGAATCCATACGCTAGAGTGACTTCCAAAGATGGTTCGGAAACCTCAACTATGTTTCGGCTTTTCATTTCCAGCCTGTTTCTCAGTATTCCTCTATTCTTCATTGGGGTAATCTGTCCTCATATTCCGTTTGTTTACTCCTTGTTACTTTGGAGATGTGGGCCTTTTCTCATGGGTGATTGGTTAAAGTGGGCGTTGGTTAGTGTCATTCAATTTGTGATTGGGAAACGCTTCTATATAGCGGCTGGAAGAGCTCTAAGAAATGGTTCAACAAACATGGATGTTCTGGTTGCTTTGGGAACTACAGCCTCTTATGTTTATTCCGTTTGTGCTCTTCTATATGGTGCCCTTACAGGATTTTGGTCTCCAACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGCTCGGCAAGTATTTGGAGTGCCTTGCCAAGGGAAAGACATCTGATGCTATTAAGAAGCTAGTGGAACTTACTCCAGCAACAGCTTTATTGGTAGTCAAAGATAAAGGTGGTAGAACTATTGAAGAAAGGGAAATAGATTCCTTACTCGTTCTACCTGGTGACACATTAAAAGTTCTTCCTGGTACAAAGATTCCTGCTGATGGCATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACTGGTGAATCAACACCAGTTTCGAAGGAGGTCAATGCAACTGTTATTGGAGGTACAATTAATATGCATGGTGCCCTTCACATTCAAGCCACCAAAGTAGGATCAGATACAGTTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACGGTTGTGATTTTGTCATTATTGACACTACTGTGCTGGTATATAGCTGGGGCTCTTGGAGCGTACCCTGAAAAATGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTTATGTTTTCAATATCTGTTGTGGTGATTGCATGTCCATGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCCAACAACGGCGTGTTAATTAAAGGAGGAGACTCCTTGGAAAGGGCTCAGAAGGTGAAATATGTCATATTTGACAAAACAGGCACTCTAACTCAGGGGAAATCCACTGTTACTGCTGCGAGGGTATTCACAGGAATGGACCGCGGAGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCTCTGGGGAAAGCAATATTGCAATATGCCCGCCATTTTCATTTCTTTGATGAGTCTTCGCCTGTCAGTGGTACCAAGAATGATGCTGGGGAGTTCAAGTCAGGGTGGCTTTATGATGTCTCAGACTTCTCTGCTCTTCCAGGACGGGGTGTCCAGTGTTTTCTAGATGGGAAGCGTATTTTGGTCGGTAACCGGAAGCTGCTGGAAGAAAATGGCATAGAGATTTCTACAGAAGTGGAAAATTTTGTTGTAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATATGATGATGTATTAACTGGAGTCTTAGGGATTGCAGACCCACTCAAGAGAGAAGCTTCTGTTGTTATAGAGGGCCTCCGGAAAATGGGAGTCATACCCGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCTGTTGCCAAAGAGGTTGGGATTGAAGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAGGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGTATAGTTGCAATGGTTGGTGATGGAATCAATGACTCGCCAGCATTAGCTGCTGCAGATGTAGGTATGGCAATTGGGGCAGGGACAGATGTGGCTATAGAAGCTGCTAACTATGTGCTGATGAGAGATAACTTGGAAGATGTGATCACAGCCATTGATCTTTCCAAAAAGACCTTCTTTCGCATTCGATTGAATTATGTATTCGCGATGGCATACAATGTTGTTGCTATACCTGTTGCTGCAGGAGTTTTCTTCCCTTCTTTGAGGATCCAGCTGCCACCATGGCTTGCTGGTGCATGCATGGCTATGTCATCTGTTAGTGTGGTATGTTCTTCTCTGCTTTTGAGAAGATACACAAGGCCCAAACTCACCACAATACTTGAAATTCTTGTAAAGTAA 2967 0.4567 MAPSTGDLQLTSAGAGKDSDELEDVRLLDSYEQLYIEHDETKRIQVRITGMTCAACSNSVETALRSVNGVTEASVALLQNKADVIFNPSLVKDDDIKNAIEDAGFEAEILQESGPADRVVGQFTIGGMTCAACVNSVEGILRRLNGVKRVVVALATSLGEVEYDPNVISKDDIVAAIEDAGFEGSFVQSNGQDQVVLGVGGVYSLADAQVLEGMLSGTKGVRQFRFDPVLNELDVVYDPEVISSRSLVDGIQLGSNGKFRLHVRNPYARVTSKDGSETSTMFRLFISSLFLSIPLFFIGVICPHIPFVYSLLLWRCGPFLMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLVVKDKGGRTIEEREIDSLLVLPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESTPVSKEVNATVIGGTINMHGALHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVILSLLTLLCWYIAGALGAYPEKWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLERAQKVKYVIFDKTGTLTQGKSTVTAARVFTGMDRGEFLTLVASAEASSEHPLGKAILQYARHFHFFDESSPVSGTKNDAGEFKSGWLYDVSDFSALPGRGVQCFLDGKRILVGNRKLLEENGIEISTEVENFVVELEESAKTGILVAYDDVLTGVLGIADPLKREASVVIEGLRKMGVIPVMVTGDNWRTARAVAKEVGIEDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANYVLMRDNLEDVITAIDLSKKTFFRIRLNYVFAMAYNVVAIPVAAGVFFPSLRIQLPPWLAGACMAMSSVSVVCSSLLLRRYTRPKLTTILEILVK 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02005 988 SUPERFAMILY HMA, heavy metal-associated domain 38 112 IPR036163 GO:0046872
Viun3g02005 988 ProSitePatterns E1-E2 ATPases phosphorylation site. 644 650 IPR018303 -
Viun3g02005 988 FunFam Copper-exporting P-type ATPase 742 793 - -
Viun3g02005 988 SUPERFAMILY Calcium ATPase, transmembrane domain M 376 945 IPR023298 -
Viun3g02005 988 CDD P-type_ATPase_Cu-like 283 959 - -
Viun3g02005 988 Gene3D - 410 532 - -
Viun3g02005 988 SFLD p-type atpase 624 913 IPR044492 -
Viun3g02005 988 CDD HMA 122 183 IPR006121 GO:0046872
Viun3g02005 988 SUPERFAMILY HAD-like 641 968 IPR036412 -
Viun3g02005 988 Gene3D - 653 795 IPR023299 GO:0000166
Viun3g02005 988 PRINTS Copper-transporting ATPase 1 signature 43 68 - -
Viun3g02005 988 PRINTS Copper-transporting ATPase 1 signature 98 118 - -
Viun3g02005 988 PRINTS Copper-transporting ATPase 1 signature 143 164 - -
Viun3g02005 988 PRINTS Copper-transporting ATPase 1 signature 69 92 - -
Viun3g02005 988 NCBIfam copper ion binding protein 44 107 IPR006122 GO:0005507
Viun3g02005 988 NCBIfam copper ion binding protein 122 183 IPR006122 GO:0005507
Viun3g02005 988 Gene3D - 121 186 - -
Viun3g02005 988 Gene3D - 633 912 IPR023214 -
Viun3g02005 988 ProSitePatterns Heavy-metal-associated domain. 48 78 IPR017969 GO:0046872
Viun3g02005 988 FunFam Copper-exporting P-type ATPase A 40 110 - -
Viun3g02005 988 NCBIfam heavy metal translocating P-type ATPase 356 971 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun3g02005 988 Pfam haloacid dehalogenase-like hydrolase 638 876 - -
Viun3g02005 988 SUPERFAMILY HMA, heavy metal-associated domain 122 190 IPR036163 GO:0046872
Viun3g02005 988 FunFam Copper-exporting P-type ATPase A 118 187 - -
Viun3g02005 988 ProSiteProfiles Heavy-metal-associated domain profile. 42 108 IPR006121 GO:0046872
Viun3g02005 988 SUPERFAMILY Calcium ATPase, transduction domain A 442 528 IPR008250 -
Viun3g02005 988 FunFam Copper-transporting ATPase 1, putative 410 532 - -
Viun3g02005 988 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 26 983 - -
Viun3g02005 988 Gene3D - 41 113 - -
Viun3g02005 988 FunFam Probable copper-transporting ATPase HMA5 764 919 - -
Viun3g02005 988 CDD HMA 45 108 IPR006121 GO:0046872
Viun3g02005 988 Pfam E1-E2 ATPase 423 621 - -
Viun3g02005 988 Pfam Heavy-metal-associated domain 123 183 IPR006121 GO:0046872
Viun3g02005 988 Pfam Heavy-metal-associated domain 46 106 IPR006121 GO:0046872
Viun3g02005 988 PRINTS P-type cation-transporting ATPase superfamily signature 809 819 - -
Viun3g02005 988 PRINTS P-type cation-transporting ATPase superfamily signature 642 656 - -
Viun3g02005 988 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Viun3g02005 988 PRINTS P-type cation-transporting ATPase superfamily signature 885 897 - -
Viun3g02005 988 PRINTS P-type cation-transporting ATPase superfamily signature 787 798 - -
Viun3g02005 988 PRINTS P-type cation-transporting ATPase superfamily signature 478 492 - -
Viun3g02005 988 ProSitePatterns Heavy-metal-associated domain. 125 154 IPR017969 GO:0046872
Viun3g02005 988 NCBIfam HAD-IC family P-type ATPase 395 663 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g02005 988 NCBIfam HAD-IC family P-type ATPase 743 947 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g02005 988 ProSiteProfiles Heavy-metal-associated domain profile. 119 185 IPR006121 GO:0046872
Viun3g02005 988 FunFam Copper-transporting ATPase RAN1 649 741 - -
Viun3g02005 988 SFLD Haloacid Dehalogenase 624 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02005 Viun-Chr3 15952743 15958028 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02005 3 15952743 15958028 Viun3g02005 3 15952743 15958028 ECH