Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01523 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGCAGTGGACTTGATTGGAAGCAAACCTTGTTGGAGGCTCAGGACTTGGAACTCCCAAAGCCTAATCTGATGAGAAAACAACAACAGCAACAACAGCAGCAGCATCAGCAAACTCAGCCTTCAGAGTCTTTGAAGTGCCCAAGATGTGACTCTACCAACACCAAGTTTTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTTTACGAAATGTTCCGGTAGGTGGTGGAAGGAAGAACAAGAGGGTCAAAAAACCAAACACTCCCACACCATCTTCCACCACCGCCACTACCACCCCGACAACAGCCAGCCCTTCTACTTGCACTGCCACCGTCACAACCTCAATTGGCAAAATGGATGCTATGCTGGGTGGTGGCCACATGACAATTCAAACTCCTCTTGCAGATGATCACAAAAACATGGCTTCCTCTCTCTACCAAGCTCTAATTCGCCCACCACCTTTGCTGCTACAACAGAATCTGATGAACGCGAGAGACTTAGACGGCAAAGATTTTGGTATTGGTATAGGTAACAATGGTATCTTCCCGAGTTCAACTTTGCCTCTTCCTCATCAAAGCCAAAGCCTACTCTTCCCTTTCTCAACCTCAAGCAGCTCTTTTGACACCAACCCTTGTTCGGTGTCAACCTCTCTGAGATCATCCAATGTTTATAACTATGGGGAGGAGTTCAAAGCAGCGGAAGAACCGACCATCAACAGTACTGCTATAGCGCCTGGCACAGGTGGCGCTAACACACAGCCATGGGAGATAGCAGCAACAAGTGGTGTTGGCTTGGGAACTTCAAACTATTGGAATTGGGAGGACTTTGATTCATTGGTCTCAACTGATCTAAAAGATCCCTGGGATGATTCTGACATCAAACCCTGA 960 0.4729 MGLSSKQVSSSGLDWKQTLLEAQDLELPKPNLMRKQQQQQQQQHQQTQPSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKPNTPTPSSTTATTTPTTASPSTCTATVTTSIGKMDAMLGGGHMTIQTPLADDHKNMASSLYQALIRPPPLLLQQNLMNARDLDGKDFGIGIGNNGIFPSSTLPLPHQSQSLLFPFSTSSSSFDTNPCSVSTSLRSSNVYNYGEEFKAAEEPTINSTAIAPGTGGANTQPWEIAATSGVGLGTSNYWNWEDFDSLVSTDLKDPWDDSDIKP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01523 319 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Viun3g01523 319 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Viun3g01523 319 MobiDBLite consensus disorder prediction 32 55 - -
Viun3g01523 319 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 209 IPR045174 GO:0003700|GO:0006355
Viun3g01523 319 MobiDBLite consensus disorder prediction 91 132 - -
Viun3g01523 319 Pfam Dof domain, zinc finger 52 105 IPR003851 GO:0003677|GO:0006355
Viun3g01523 319 MobiDBLite consensus disorder prediction 110 132 - -
Viun3g01523 319 MobiDBLite consensus disorder prediction 22 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01523 Viun-Chr3 10102375 10104404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01523 53 110 C2C2-Dof Transcription Factor Family AT1G28310 84.746 4.31e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g01523 zf-Dof 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01523 - - gmx:100818111 452.981