Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01462 ATGGAACATGATCCAGGGAGGAGAGAGGAAAATACAAAAATTCATCATCTTGCAGTTCCACCAAAACCGCAGCAAAAATGTCCTCGCTGCAATTCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGTCTCTCACAGCCTCGTCACTTCTGCAAAACATGTAAACGCTACTGGACGCAGGGTGGAACCTTCAGAAACATACCCGTTGGTGGTGCTTCCCGTAAGGCCAAACGTGGAAAAACAGATTCTTCTTCACTCTCCAATTCACTCACATTACCACACTCAAATTTCATGAACCCTTCTGCATCACTCACCATGGCTCACTCAACTAGCCCCTACTATCAACTTGCAGCCGCCGCCGCCGCCTCCGCCGGTGGTGGGTATTTGCCATCTATGGCAACGCTTCATTCTCTGACCACATCACAGCCTTTCAACCAGTACCTGAATGTTGCCGGTTCTTCTTCTTCTTCTTCTATTTTGCCTCTTCTGTCTGGCTTCAACGCTGCTGCTTCTTTTTCTCCTCGGTTCCATCACGTGGGAATCAGAGAGAGGGTGGAATCTCTCTATCCTGCACCACAACGTTTGCTTCCATCAAACATGTCTGGTGGCAGTGCTGCAGCAGCACAAAGCTTGATTAATGATGTTTCGAGTTCAAACCTGGCTGGTTCTGATGTCTCTTTGTGGAGTGCTACTATCAACGCCACTTCCATCACTGGAAACTCTGATCGCAACAATGTCAAAGGTGGTTCTTCCTCTTTGATCCCAAACCACTGGCTTCATCCTCCGGGGTATCGTCCTCCTCAATAA 810 0.4815 MEHDPGRREENTKIHHLAVPPKPQQKCPRCNSTNTKFCYFNNYSLSQPRHFCKTCKRYWTQGGTFRNIPVGGASRKAKRGKTDSSSLSNSLTLPHSNFMNPSASLTMAHSTSPYYQLAAAAAASAGGGYLPSMATLHSLTTSQPFNQYLNVAGSSSSSSILPLLSGFNAAASFSPRFHHVGIRERVESLYPAPQRLLPSNMSGGSAAAAQSLINDVSSSNLAGSDVSLWSATINATSITGNSDRNNVKGGSSSLIPNHWLHPPGYRPPQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01462 269 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Viun3g01462 269 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Viun3g01462 269 MobiDBLite consensus disorder prediction 69 89 - -
Viun3g01462 269 MobiDBLite consensus disorder prediction 239 253 - -
Viun3g01462 269 MobiDBLite consensus disorder prediction 239 269 - -
Viun3g01462 269 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 176 IPR045174 GO:0003700|GO:0006355
Viun3g01462 269 Pfam Dof domain, zinc finger 24 79 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01462 Viun-Chr3 9535607 9536905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01462 10 148 C2C2-Dof Transcription Factor Family AT4G21050 40.278 3.52e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g01462 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01462 - - gmx:100814555 295.434