Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01461 ATGGGAAGAGTCATGGAAAAACCAACCCAAGATCTTCTTCACCAGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCCAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACCCGAGGTGGAACTCTCAGAAACGTTCCCGTTGGTGGTGGCTGCAGAAAAAACAAGCGTCTCAAACGTCCAAACGGTGACGCTTCTGCTAACTCTCCTCCTTCTACCTCCAATTCAAACCCTCCCTCACTGCCCCACATCCCTTCTACTTCAACCGCAAACCATGTCAATGTAAACCCTTTGTTTTATGGCCTACCCAATAGTAACGCTTCTCATGTCATGGATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAGCTGAGTGCCCTTGGGTTAGGTTTTTCATCCGGGGGTAACGTTATCTCAACTGAACCTAGTGATAATGGGTTCAGCGCCACTGCTACCACTACTTCCAATACTAACAACTTTCTTTCTGCTTATAATTCCATATTTGGTTCTTCTTCCTCCTCAACTTGTGCACCCACCACTCCCGTTATGGCTTCCTTGCTGAGTTCTACTCTCCTGCAACAGAAGTTTATCGCTGGTGCTGGGGTGAAGGGTGATCATGTTGGCAACAGTTTCCAGGGTTTGGCACCGCTGCAAGGGTTGCAAATGGAAGGGAGTAATAATATCAGCTCAAAAGAAGTGAAAGCTGAAGGACCAAACAGGTTGGAGTGGAGTAATAATAACAATAACAATGGCTGTCAAAACCAGATGGAGCATGTGGGCTTGTCTGATCCTAATTCGCTTTATTGGAACACTGCAACGAGTTTGAGTGCTTGGAGCGATCAACCTAACTTTGGTCCTTCGGTCACTTCTCTGATCTAG 930 0.471 MGRVMEKPTQDLLHQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPNGDASANSPPSTSNSNPPSLPHIPSTSTANHVNVNPLFYGLPNSNASHVMDVPFPRFNLQSQLSALGLGFSSGGNVISTEPSDNGFSATATTTSNTNNFLSAYNSIFGSSSSSTCAPTTPVMASLLSSTLLQQKFIAGAGVKGDHVGNSFQGLAPLQGLQMEGSNNISSKEVKAEGPNRLEWSNNNNNNGCQNQMEHVGLSDPNSLYWNTATSLSAWSDQPNFGPSVTSLI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01461 309 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Viun3g01461 309 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Viun3g01461 309 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 198 IPR045174 GO:0003700|GO:0006355
Viun3g01461 309 MobiDBLite consensus disorder prediction 82 105 - -
Viun3g01461 309 MobiDBLite consensus disorder prediction 65 105 - -
Viun3g01461 309 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01461 Viun-Chr3 9521951 9523810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01461 20 309 C2C2-Dof Transcription Factor Family AT1G28310 43.354 2.36e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g01461 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01461 - - vum:124826825 551.206