Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01460 ATGTTGAACAAGTGTGAGAAAATGGTAGCAGTCACCCTTCCAACAGCGTCTAACAAATGGACACAGGTAGATGATCGCAAGACCTCTATGGGAAGAGTCATGGAAAAACCAACCCAAGATCTTCTTCACCAGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCCAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACCCGAGGTGGAACTCTCAGAAACGTTCCCGTTGGTGGTGGCTGCAGAAAAAACAAGCGTCTCAAACGTCCAAACGGTGACGCTTCTGCTAACTCTCCTCCTTCTACCTCCAATTCAAACCCTCCCTCACTGCCCCACATCCCTTCTACTTCAACCGCAAACCATGTCAATGTAAACCCTTTGTTTTATGGCCTACCCAATAGTAACGCTTCTCATGTCATGGATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAGCTGAGTGCCCTTGGGTTAGGTTTTTCATCCGGGGGTAACGTTATCTCAACTGAACCTAGTGATAATGGGTTCAGCGCCACTGCTACCACTACTTCCAATACTAACAACTTTCTTTCTGCTTATAATTCCATATTTGGTTCTTCTTCCTCCTCAACTTGTGCACCCACCACTCCCGTTATGGCTTCCTTGCTGAGTTCTACTCTCCTGCAACAGAAGTTTATCGCTGGTGCTGGGGTGAAGGGTGATCATGTTGGCAACAGTTTCCAGGGTTTGGCACCGCTGCAAGGGTTGCAAATGGAAGGGAGTAATAATATCAGCTCAAAAGAAGTGAAAGCTGAAGGACCAAACAGGTTGGAGTGGAGTAATAATAACAATAACAATGGCTGTCAAAACCAGATGGAGCATGTGGGCTTGTCTGATCCTAATTCGCTTTATTGGAACACTGCAACGAGTTTGAGTGCTTGGAGCGATCAACCTAACTTTGGTCCTTCGGTCACTTCTCTGATCTAG 1017 0.469 MLNKCEKMVAVTLPTASNKWTQVDDRKTSMGRVMEKPTQDLLHQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPNGDASANSPPSTSNSNPPSLPHIPSTSTANHVNVNPLFYGLPNSNASHVMDVPFPRFNLQSQLSALGLGFSSGGNVISTEPSDNGFSATATTTSNTNNFLSAYNSIFGSSSSSTCAPTTPVMASLLSSTLLQQKFIAGAGVKGDHVGNSFQGLAPLQGLQMEGSNNISSKEVKAEGPNRLEWSNNNNNNGCQNQMEHVGLSDPNSLYWNTATSLSAWSDQPNFGPSVTSLI 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01460 338 MobiDBLite consensus disorder prediction 94 134 - -
Viun3g01460 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 226 IPR045174 GO:0003700|GO:0006355
Viun3g01460 338 MobiDBLite consensus disorder prediction 111 134 - -
Viun3g01460 338 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Viun3g01460 338 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Viun3g01460 338 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01460 Viun-Chr3 9521713 9523810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01460 49 338 C2C2-Dof Transcription Factor Family AT1G28310 43.354 4.67e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g01460 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01460 - - vum:124826825 564.688