Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g01339 ATGGCCCAAGTAGGCCAAGCCAGTGAAGGGATTAAGCTGTTTGGAACAACGATTACCTTGCATGGCAGAGAAAGAAGAGAAGATAGTAAAGTGAGTGAAGAAGGAACAGAAGAAAAGAGAGCTGATAGGATCATACCATGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGTTACTTCAACAACTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACCGCCGGCGGAGCCCTCCGCAACGTACCCATAGGCGCCGGTCGCCGGAAGGCCAAACCGCCGTGCCATGACCCTGCAGGGTTTCTCGACGGTGGACTCGCGTCCACGGTTCAGCAACAATTTGGTTTGGAAGAGAGGTTGATCTTGGATCAATGGCATGTTGCCACCATCGCTCACGGCGATTTCCGGCAGTTTTTTCCGACTAAAAGGCGGAGGATAAACTCAGGTGAGCATGAAAGTCAAAAAGAGTTTGTTATCACAGAACATAGGAATGAGATAGAAACGAAAGAGGGTTTAAAAGGCAGGGACAGTGTAAAGCTTATCTGA 564 0.4876 MAQVGQASEGIKLFGTTITLHGRERREDSKVSEEGTEEKRADRIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPPCHDPAGFLDGGLASTVQQQFGLEERLILDQWHVATIAHGDFRQFFPTKRRRINSGEHESQKEFVITEHRNEIETKEGLKGRDSVKLI 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g01339 187 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Viun3g01339 187 PANTHER CYCLIC DOF FACTOR 2 28 98 IPR045174 GO:0003700|GO:0006355
Viun3g01339 187 Pfam Dof domain, zinc finger 43 98 IPR003851 GO:0003677|GO:0006355
Viun3g01339 187 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g01339 Viun-Chr3 8468100 8469592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g01339 6 151 C2C2-Dof Transcription Factor Family AT1G29160 55.422 6.18e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun3g01339 zf-Dof 9.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g01339 - - pvu:PHAVU_002G238400g 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01339 3 8468100 8469592 Viun3g01339 3 8468100 8469592 ECH