Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00221 ATGAGAAACTCTGTGCAGTTTCTTTTGCCTCAGATGTTGTGTTTGATGTTACTGAGTTTTCAACATGAAGTTGAAACAAAGTCCACCATTGAACCATGCAATTCCTCAGACTCGTGTCCCTCTCTCCTCTCGTATCTCGTTCCCTGGGACTCCAAAGTATCAGAAATCGCCACTCGTTTCCACGTAAACGCCTCTGATATCTTGGCCTCCAACTCTCTCTTCCCCATAACATCATCAAGTGCACACCAAATCCTCAGGGCCAAAACGTTTCTCAAAATACCCATCTTCTGTTCTTGCGTGGATGGCATCCGAAGGTCCATCTCAACCACTTACACTGTTCATGCAGCAGACACACCTGCGTCCATATCAGAAGCTTATGGTGGGTTGGTCAGTGCTGAACAAATCAAGATTGTGAACAGCATCAATGGCAGCAACCCCTTGAGGAGTGGGGGCACCCTTGTGATTCCACTGCCATGCACTTGTTTTGACAACGTTAACAATGGGGGAACCGCTGTTTACATGTCGTATGTTGTGCAGACAAGAGAGAGCCTGAGTAGCATAGCAGCAAAGTTTGGTACAACTATTTCGGACTTGAAAGCTGTGAATGGGTTTTGGGAACCTGCGGTAGATCCCGGAGACATTCTATCTGTTCCCGTTGCAGCATGTTCATCAGCAACCTTGAAATGGTACGATGAGAGTATGATAGTCCCAAATGGCTCATATACATTAACTGCCAGCAACTGCATCAAATGCAGTTGCGAACCAATGGATATTACGATGCAATGTGTTCCTTCTGGACTAGCTGTCCCCTGCTATAACTTACGTTGCAAACAATCCAATCTTATTATTGGCAACGAATGTGTGGAGCATTCAGAAACAGCTTGCAATGTGATCCAATGTGTTTACCGTGGCCACAGGGGTGGAAAAATTCTGAGTAGTACGAAGAACTCTTCTTACCTCCAGTGCCCTGATAATGTGTGTCATAGAGGAGCATCGTGTAGGCCTTTCTCATCATATTCTGAAGACCCATTTGGTAGTAGAGAATAA 1047 0.4537 MRNSVQFLLPQMLCLMLLSFQHEVETKSTIEPCNSSDSCPSLLSYLVPWDSKVSEIATRFHVNASDILASNSLFPITSSSAHQILRAKTFLKIPIFCSCVDGIRRSISTTYTVHAADTPASISEAYGGLVSAEQIKIVNSINGSNPLRSGGTLVIPLPCTCFDNVNNGGTAVYMSYVVQTRESLSSIAAKFGTTISDLKAVNGFWEPAVDPGDILSVPVAACSSATLKWYDESMIVPNGSYTLTASNCIKCSCEPMDITMQCVPSGLAVPCYNLRCKQSNLIIGNECVEHSETACNVIQCVYRGHRGGKILSSTKNSSYLQCPDNVCHRGASCRPFSSYSEDPFGSRE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00221 348 SMART LysM_2 175 218 IPR018392 -
Viun3g00221 348 SMART LysM_2 110 156 IPR018392 -
Viun3g00221 348 Pfam LysM domain 111 156 IPR018392 -
Viun3g00221 348 Pfam LysM domain 176 218 IPR018392 -
Viun3g00221 348 ProSiteProfiles LysM domain profile. 174 217 IPR018392 -
Viun3g00221 348 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 325 - -
Viun3g00221 348 ProSiteProfiles LysM domain profile. 109 155 IPR018392 -
Viun3g00221 348 CDD LysM 175 217 IPR018392 -
Viun3g00221 348 SUPERFAMILY LysM domain 174 218 IPR036779 -
Viun3g00221 348 Gene3D LysM domain 167 226 IPR036779 -
Viun3g00221 348 Gene3D LysM domain 104 166 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00221 Viun-Chr3 1257102 1259989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00221 19 323 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 45.928 7.86e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00221 - - vra:106767878 638.262