Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02153 ATGAACCCAGGAGTTGTTCTGTCCAGAAAGGACATGGACCGGATCAAAGGCCCATGGAGCCCCGAGGAAGACGACGCTCTGCAGAAGCTCGTCGAGAAGCACGGACCCAGGAACTGGTCCCTCATCAGCAAGTCCATCCCTGGCCGCTCCGGCAAGTCCTGCCGGCTCCGCTGGTGCAATCAGCTCTCTCCCCAGGTCGAGCACCGGGCCTTCACGCCCGAGGAAGACGACACCATAGTCAGGGCCCATGCCCGCTTCGGCAACAAATGGGCCACCATAGCCCGCTTGCTCCAGGGCAGAACCGACAACGCCATCAAGAACCACTGGAACTCCACCTTGAAGCGCAAGTGCGCCTCATCCATCATGGACGACCACCCCCCACCGCTTAAGCGCTCCGTCAGCGCCGGCGCGGCCATCCCCGTCTCCACCGGACTCTACATCAACCCTCCCACACCCGGTAGCCCCTCCGGATCCGATGTCAGCGAGTCCAGCGTGCCGCTCGCATCCCCCTCACACGTCTTCCGCCCCGTGCCTAGAACCGCCGCGGTTCTACCGCCGGTAGAAACCACCTCCTCCTCCAATGACCCTCCCACTTCCCTTTCCCTGTCCCTCCCCGGCGTCGACTCTTCCGAGGTCTCCAATCGGGTAACCGAGCCACCACCACCGCCACCGCCACAGCCCTCGAACACCATCCCTCTGCTGCCAATGATGGCCGCTCCGATGCCGGTTGTGCCGCAGTTGAAGCCACCGGGATTGGGGGCTTTCAATCTGAGTGCGGAGTTTTTGGCGGTGATGCAGGATATGATAAGGAAGGAGGTGAGGAGTTATATGGAGCGGCAGAATCAGAACCCGAATGGGATGTGTTTTCAGGCAGCCGATGATGGGTTTAGGAATACTTCCGTCAAGCGAATTGGGATTAGCAGGGTGGACTCGTAA 936 0.61 MNPGVVLSRKDMDRIKGPWSPEEDDALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIVRAHARFGNKWATIARLLQGRTDNAIKNHWNSTLKRKCASSIMDDHPPPLKRSVSAGAAIPVSTGLYINPPTPGSPSGSDVSESSVPLASPSHVFRPVPRTAAVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRVTEPPPPPPPQPSNTIPLLPMMAAPMPVVPQLKPPGLGAFNLSAEFLAVMQDMIRKEVRSYMERQNQNPNGMCFQAADDGFRNTSVKRIGISRVDS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02153 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 117 IPR017930 -
Viun2g02153 311 MobiDBLite consensus disorder prediction 146 172 - -
Viun2g02153 311 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Viun2g02153 311 MobiDBLite consensus disorder prediction 186 215 - -
Viun2g02153 311 FunFam MYB transcription factor 16 67 - -
Viun2g02153 311 CDD SANT 18 60 IPR001005 -
Viun2g02153 311 MobiDBLite consensus disorder prediction 1 21 - -
Viun2g02153 311 Pfam Myb-like DNA-binding domain 19 77 - -
Viun2g02153 311 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Viun2g02153 311 Gene3D - 69 130 - -
Viun2g02153 311 CDD SANT 70 113 IPR001005 -
Viun2g02153 311 PANTHER MYB PROTEIN-RELATED 16 200 - -
Viun2g02153 311 SMART sant 15 64 IPR001005 -
Viun2g02153 311 SMART sant 67 115 IPR001005 -
Viun2g02153 311 MobiDBLite consensus disorder prediction 186 229 - -
Viun2g02153 311 FunFam Transcription factor MYB44 70 116 - -
Viun2g02153 311 Gene3D - 15 67 - -
Viun2g02153 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 66 IPR017930 -
Viun2g02153 311 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Viun2g02153 311 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02153 Viun-Chr2 29511140 29513195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02153 8 310 MYB Transcription Factor Family AT4G37260 52.266 9.24e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g02153 Myb_DNA-bind_6 1.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02153 2 29511140 29513195 Viun3g03877 3 46183431 46184894 ECH
Viun9g03432 9 40558502 40559578 Viun2g02153 2 29511140 29513195 ECH
Viun8g00381 8 2536665 2538461 Viun2g02153 2 29511140 29513195 ECH
Viun2g02153 2 29511140 29513195 Viun2g02153 2 29511140 29513195 ECH
Viun3g03877 3 46183431 46184894 Viun2g02153 2 29511140 29513195 PCT