Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01914 ATGGCGGGTTTATTCTCACTAGGAGGTAGAGGGAACAACAACAACGAAGAGGAGATTCCTCCCCCTCCTGATACCCTATACTGGTATAACAACAAGAATGACGATGTTTCTTCTTATCACCGAGGAGGTGGGTTCGAGCTATGGAACCAACAGCAACAACAACACTTTATGGGTCAGGGTCCTCCACAACCACGACCTCTCTTTCACCAAGATCTATACTCCGCCTTGGGTGTCGGACCCAGCAGACCCATATCGGACGATCAGTCATCGTCGAGATCCAGCTTCATGGTGGGAGGAAGCGGGAGTGGAAGCGGTGGGATTAGCTGTCAGGACTGTGGGAACCAAGCTAAGAAGGATTGCCCTCACATGCGGTGCAGGACATGCTGCAAGAGCCGGGGTTTCGATTGTCAAACCCATGTCAAGAGCACATGGGTCCCCGCTTCACGCCGCCGTGAGCGACAGCAACAACTCTCTTCGTTGCAACAACAAAACATGGAAACTTCTGGAGAGCTTCCCAGGAGGCAGAGAGAAAGAGATCATAATAACCCCACCTCCTCTTCTCCGCTTGCTTGCACTCGCTTGCCTTCCAATCCCTCCTCTTCAGCAGGGTTAGAGGAGGTCAATTTCCCGGCGGTGGTGAGATCTTCTGCGGAGTTCAGGTGCGTACGTGTGAGCTCGATGGATGAGGCGGAGGAGGAGTATGCATACTCAACGGCTGTCAACATAGGAGGACATGTGTTCAAAGGGATTTTATACGACTATGGTCCAGAAGGTAACAGTAACTACATGGGTGCTGCTGGGGAAAGCTCCTCCACTGGTGTTGGAGGTTTGAACCTCACTACTGGTGCCGTTGTCTCAGAGCCACTCCTTGATCCTTCTTCTTCCTTGTATCCAGCTCCTCTTAACACCTTCATGCCTGGTAGTGGTACGCAATTCTTCCCTCACCCACGATCTTGA 957 0.5193 MAGLFSLGGRGNNNNEEEIPPPPDTLYWYNNKNDDVSSYHRGGGFELWNQQQQQHFMGQGPPQPRPLFHQDLYSALGVGPSRPISDDQSSSRSSFMVGGSGSGSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSSLQQQNMETSGELPRRQRERDHNNPTSSSPLACTRLPSNPSSSAGLEEVNFPAVVRSSAEFRCVRVSSMDEAEEEYAYSTAVNIGGHVFKGILYDYGPEGNSNYMGAAGESSSTGVGGLNLTTGAVVSEPLLDPSSSLYPAPLNTFMPGSGTQFFPHPRS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01914 318 NCBIfam LRP1 C-terminal domain 209 256 IPR006511 -
Viun2g01914 318 MobiDBLite consensus disorder prediction 146 203 - -
Viun2g01914 318 Pfam Domain of unknown function (DUF702) 106 257 - -
Viun2g01914 318 MobiDBLite consensus disorder prediction 182 203 - -
Viun2g01914 318 MobiDBLite consensus disorder prediction 78 100 - -
Viun2g01914 318 NCBIfam putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Viun2g01914 318 MobiDBLite consensus disorder prediction 83 100 - -
Viun2g01914 318 MobiDBLite consensus disorder prediction 1 25 - -
Viun2g01914 318 MobiDBLite consensus disorder prediction 146 169 - -
Viun2g01914 318 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 302 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01914 Viun-Chr2 27891321 27893998 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Viun2g01914 DUF702 8.7e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03630 9 41743166 41746070 Viun2g01914 2 27891321 27893998 ECH
Viun2g01914 2 27891321 27893998 Viun2g01914 2 27891321 27893998 ECH
Viun9g03888 9 43142132 43143448 Viun2g01914 2 27891321 27893998 ECH