Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01353 ATGTCACCCGATGACACACCACCTTCAAAGCCCGCCACAGCAACCACAACAACAACAACAGACCAAGAGACCCAAAGTTCAGGTGGCAGAAAAGGCTCCTCCACAAGGCCCCATGAGCAAGGCCTCAAGTGTCCACGATGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGGGCTTTGCGTAATGTCCCTATTGGCGGTGGATGCAGGAAGAACAAGAAGGTGAGGTCATCGAGGCTCTCGTGTGACTCCAAGGACTCTGGTTCCTCCTCTTCAGACCTTGGTGGCCTCAAGTTCCTTCATACCCTTCCTCCTTCCATGGACTTTCACCTTGGAGGGTTACCCTTCCCTAGGCTTCACCATCACCCTCCACCAACATATAACCAATTTTCCTCTTTTGGGGACACTTCCAGCGCTTCTTCCTGTTTCAACCTTGACCCTTCTCCCGGCACCACCTCAAGTTCTTTCGCTGCTCTTAATTACCCTTTCTCTTACAATGGTGCAATCCAGGGTATGAGCGCTATGAATGTTCACAGTGGTCACGCCTCTTCCATTGAGTCTTTGAGTTCTATGAACCAGGACTTGCACTGGAAGCTGCAGCAGCAGCGATTGGCAATGCTGTTCGGTGGAGATAACAGCCAGAAAGATCACAGTGGTGGTGGTGGTGGTGGTGGGGTGTCAACGACGATTAACCAGCTGGAGAACCAGACACAGAAACCACAACCCATTTTGTTTCAAAATCTTGAGGTTTCAAAGGGAGGGATTTTCCCCGTTGAGAACTGTAGAAAAGAACATGGTCCATGTGGGGACACACACACACCCTCCACTGAGTGGTTCTTTGGGAATTCTTATGCCTCGGTGACTCCTCCTACAGCTACTACTACCAGTAGTGGTGGCCCAGGGAATGATAATGCAAGCAATTGGAGTAGCGGTGTGAATGCTTGGGGTGATGTGCCGCAGCAATATACTGCTTTGCCCTAG 1047 0.5033 MSPDDTPPSKPATATTTTTTDQETQSSGGRKGSSTRPHEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVRSSRLSCDSKDSGSSSSDLGGLKFLHTLPPSMDFHLGGLPFPRLHHHPPPTYNQFSSFGDTSSASSCFNLDPSPGTTSSSFAALNYPFSYNGAIQGMSAMNVHSGHASSIESLSSMNQDLHWKLQQQRLAMLFGGDNSQKDHSGGGGGGGVSTTINQLENQTQKPQPILFQNLEVSKGGIFPVENCRKEHGPCGDTHTPSTEWFFGNSYASVTPPTATTTSSGGPGNDNASNWSSGVNAWGDVPQQYTALP 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01353 348 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Viun2g01353 348 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Viun2g01353 348 MobiDBLite consensus disorder prediction 232 252 - -
Viun2g01353 348 MobiDBLite consensus disorder prediction 311 348 - -
Viun2g01353 348 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Viun2g01353 348 MobiDBLite consensus disorder prediction 311 339 - -
Viun2g01353 348 MobiDBLite consensus disorder prediction 7 34 - -
Viun2g01353 348 MobiDBLite consensus disorder prediction 1 44 - -
Viun2g01353 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 227 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01353 Viun-Chr2 24158212 24160050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01353 33 348 C2C2-Dof Transcription Factor Family AT5G65590 39.319 1.14e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun2g01353 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01353 - - gmx:100780729 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01353 2 24158212 24160050 Viun3g03156 3 37933436 37935213 PCT