Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00976 ATGTCTGAGGCTGCTAAAGACTCAGCCATAAAGCTGTTTGGTAGAACAATTTCTCTACTACGCCACAACGAGATTTCTGCTAATGGTTCTTCTTCTGAACCTGCTCCTCCTCAAGATTATTCTCATCATCACAGTCCTCCTTCATCTTCATCTTTTCCACGTGAAGTGACCTCCACAACGAACCATGAACCTGAGAGGGATAAGGAACCATCAAGGAACGAACTCACCTCAACACAAGATGACGAAGCCTTACATGAACAACTGAAATCTCCAACATCTTCATGCAATCTCAAGAACCCCAAGACCCCCTCAACGGAAATAGAAACTACCTTAATGAAATCACCTAAAAAAGGAGACCAAAGTGACACGACAAGCGCATCAGAGGACAAAACTCCAAAGAAACCAGACAAGATCCTTCCATGCCCTCGTTGCAACAACATGGACACCAAGTTCTGCTACTACAACAACTATAACGTGAATCAGCCACGCCACTTTTGCAAGCACTGCCAGAGATACTGGACTGCGGGAGGAACCATGAGGAACGTGCCGGTCGGTGCAGGTCGCCGCAAGAACAAAAACTCTTCTTCTGCTGCATCGCATTATCGTCAAATCATGGTTCCCGACACCCTTCAGAACGGATCATTGCACAGTGCAGTGTTGACCTTTGGATCAGATTTCCCTCTCTGTGATTCCATGGCTTCTGTGTTGAGCCTTGCTGAGAAAGCACAAAACGGTGTCCTCAACGGGTTTCATTCACCTAAGCATAATGTTAATAATAACAACACTGGTGATGATATTAACTCGGTTGGTGCTTCTGTTATGGCTTCATCTTTGTCTGAGAAGAGAGACAATGCTACTACTAGCCCTCATGAAGAATCAGTGGATAAGATTTATCATCAAGGTTTCAGTCCTCAACTGTGCCTCCCAGGTTCTTCTTCTTCATCATCATCTTCTTCTCCTTGGCCTTATCCATGGAACCCTGCAATGACTCCTTCTGCTTTTTACCAACCCGTGTCCTTCTACCCCACACCAGCATTCTGGAGATGCATGCCACCACCACCCTCATGGAGTGTAAATTACCAATCAGCCCCTACCTCTGGTCCAAACTCACCAACCTTGGGGAAACATTCAAGAGAAGGGGACATCTTGTTCCAAAAGCCTGGCACTGAAAGCAGCAACACTGTGTTGATCCCCAAGACGCTGAGAATTGATGACCCTACAGAAGCTGCAAAGAGCTCTATATGGTCCACACTAGGGATCAAGAATGAGAAGGGGAACTCTCTCAATGGAGGAGGCCTTTTCAAGGCATTTGCATCAAAGGGAGGTAGTGATGATAAGAAGAACCATGTGGTGGTTGAAGCATCCCCAGTGTTGCAAGCCAACCCTGCAGCTTTGTCAAGGTCTCTTGTATTCCGTGAGAGAACATAG 1428 0.4629 MSEAAKDSAIKLFGRTISLLRHNEISANGSSSEPAPPQDYSHHHSPPSSSSFPREVTSTTNHEPERDKEPSRNELTSTQDDEALHEQLKSPTSSCNLKNPKTPSTEIETTLMKSPKKGDQSDTTSASEDKTPKKPDKILPCPRCNNMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSSSAASHYRQIMVPDTLQNGSLHSAVLTFGSDFPLCDSMASVLSLAEKAQNGVLNGFHSPKHNVNNNNTGDDINSVGASVMASSLSEKRDNATTSPHEESVDKIYHQGFSPQLCLPGSSSSSSSSSPWPYPWNPAMTPSAFYQPVSFYPTPAFWRCMPPPPSWSVNYQSAPTSGPNSPTLGKHSREGDILFQKPGTESSNTVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKGNSLNGGGLFKAFASKGGSDDKKNHVVVEASPVLQANPAALSRSLVFRERT 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00976 475 MobiDBLite consensus disorder prediction 24 58 - -
Viun2g00976 475 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Viun2g00976 475 MobiDBLite consensus disorder prediction 88 121 - -
Viun2g00976 475 MobiDBLite consensus disorder prediction 122 137 - -
Viun2g00976 475 MobiDBLite consensus disorder prediction 250 269 - -
Viun2g00976 475 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Viun2g00976 475 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Viun2g00976 475 MobiDBLite consensus disorder prediction 24 139 - -
Viun2g00976 475 PANTHER CYCLIC DOF FACTOR 2 1 475 IPR045174 GO:0003700|GO:0006355
Viun2g00976 475 MobiDBLite consensus disorder prediction 59 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00976 Viun-Chr2 20459203 20462827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00976 119 474 C2C2-Dof Transcription Factor Family AT3G47500 45.758 4.39e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun2g00976 zf-Dof 6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00976 - - gmx:100775201 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00976 2 20459203 20462827 Viun2g00976 2 20459203 20462827 ECH
Viun2g00976 2 20459203 20462827 Viun3g04588 3 53486971 53490245 ECH