Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00857 ATGATGTCGTATCAATCAATGGAGGAGAGGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCGTGTGGGAAGTCTCTCGGTGGCCACATCAGAACTCACATGATGAGTGAGAATTCAGCTTTAGAGAGGAACAATGCTACTAATGGCATGTTCAAGTTGAATGGCAGGGGAAAGAGGAAGAGGGATTTGGGGTCTGAAGAAAACGGTGGTGGTGGTGGTGGTGGTGGCGGTGGTGCTTATGGTCTTAGAGAGAACCCCAAGAAGACCACCAGGTTTGTGCATTCCAATTCCAGTTTGCAGCATGAAAAGTTCTGCAAAGAATGTGGTAAGGGATTTCTGTCATTGAAGGCTCTTTGTGGCCACATGGCTTGTCACTCTGAAAAGGACAAGGGATCCATCAGGTTTGAGAGCAGTTCTGGTGGGTTTTCTGAGAAGCAGAAAATGGTTATGGACAGTCAATCCGACACTGAAACTTCTACGCCAAGGAGGTCCAAGAGAATGAGGTTCAAGACCCATAGCAGTAGCAACAACCAAGCTCAATCTTCTGTTTCAGAGGTTGAGCAGGGTCAAGAAGAGGTGGCTAGGTGTTTGATGATGTTGTCCAAGGATTCTAGCTACAAGGGTCGTTTTGCTTTGTTCACAGAGTCTTCTGATAACAACTCGGTTGTTCTAGAGGCAAAGTCACCTTCTTCGGAAACCAAGGTTGCTATGATGAACAGTGATGGTAAGAATTTTATGTCTGTAGAGAAGAAGTTGGAGCAGCCCAAGGACTTGAAGCTTAAGTATGCTGAGGTTGGGTATGATTCTGATAATTCAGATTCTGGGTATTTCAGATATGGTCCTAAGGAGGTTGACTCCACTGATTCAAATAATGGGAATTTCAAGAATGAGGTTCAGTCTTCGAAAGTCTTTTCTGGGTTTGAGGATTATTATGTTGAGTCGAGGAAAGTGCCAAGCAGGAGCGTTGAATTCAAGAAATTTGTTTTGGAGGATTGGGAGAATGATAGACATGATGGTGGGGCTGCAAGGAAATTCGATTCAAAGAAATCTAAGAAACCCAACTATGATGATTCTCTTGGCCAAAATTTAGGAAGGGTTTCTAGCAGGAAAATGGCGAATGGTTCTGTGAACAAGTACGAGTGCTTAACCAGTGAAAGAGACAATGGTTATGATGATTCAGCTTACGAGAGTGATGAAAACAGCACAGACAGTGACTCTTATCCAGCTCCAAAGGCTTACAGCAACAGGAACCTCAGTGGCCAAAAGGGGAAGAAGAAATTGAAGTCAAAGAAAAACAAGGCACATGAATGTCCAATCTGCAACAAAATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCATAAGAGATCGCATTTTATAGGAGGTTCTGATGAGAACACCCTTGTGATAAGGCCAGGAGCTGCTGCAGTTCCATGCCTCATTGATCTGAACCTACCAGCACCAGTTGATGAATAG 1476 0.4431 MMSYQSMEERKFVCKYCSKRFPCGKSLGGHIRTHMMSENSALERNNATNGMFKLNGRGKRKRDLGSEENGGGGGGGGGGAYGLRENPKKTTRFVHSNSSLQHEKFCKECGKGFLSLKALCGHMACHSEKDKGSIRFESSSGGFSEKQKMVMDSQSDTETSTPRRSKRMRFKTHSSSNNQAQSSVSEVEQGQEEVARCLMMLSKDSSYKGRFALFTESSDNNSVVLEAKSPSSETKVAMMNSDGKNFMSVEKKLEQPKDLKLKYAEVGYDSDNSDSGYFRYGPKEVDSTDSNNGNFKNEVQSSKVFSGFEDYYVESRKVPSRSVEFKKFVLEDWENDRHDGGAARKFDSKKSKKPNYDDSLGQNLGRVSSRKMANGSVNKYECLTSERDNGYDDSAYESDENSTDSDSYPAPKAYSNRNLSGQKGKKKLKSKKNKAHECPICNKIFRSGQALGGHKRSHFIGGSDENTLVIRPGAAAVPCLIDLNLPAPVDE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00857 491 MobiDBLite consensus disorder prediction 49 85 - -
Viun2g00857 491 MobiDBLite consensus disorder prediction 401 421 - -
Viun2g00857 491 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Viun2g00857 491 MobiDBLite consensus disorder prediction 131 188 - -
Viun2g00857 491 MobiDBLite consensus disorder prediction 384 432 - -
Viun2g00857 491 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Viun2g00857 491 SMART c2h2final6 436 458 IPR013087 -
Viun2g00857 491 SMART c2h2final6 104 126 IPR013087 -
Viun2g00857 491 SMART c2h2final6 12 34 IPR013087 -
Viun2g00857 491 MobiDBLite consensus disorder prediction 137 158 - -
Viun2g00857 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Viun2g00857 491 SUPERFAMILY beta-beta-alpha zinc fingers 8 36 IPR036236 -
Viun2g00857 491 MobiDBLite consensus disorder prediction 357 371 - -
Viun2g00857 491 ProSitePatterns Zinc finger C2H2 type domain signature. 438 458 IPR013087 -
Viun2g00857 491 Gene3D Classic Zinc Finger 2 67 - -
Viun2g00857 491 MobiDBLite consensus disorder prediction 172 188 - -
Viun2g00857 491 MobiDBLite consensus disorder prediction 339 371 - -
Viun2g00857 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 436 458 IPR013087 -
Viun2g00857 491 SUPERFAMILY beta-beta-alpha zinc fingers 105 458 IPR036236 -
Viun2g00857 491 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 7 491 - -
Viun2g00857 491 MobiDBLite consensus disorder prediction 339 356 - -
Viun2g00857 491 Pfam C2H2-type zinc finger 106 128 - -
Viun2g00857 491 Pfam C2H2-type zinc finger 435 458 - -
Viun2g00857 491 Pfam C2H2-type zinc finger 12 35 - -
Viun2g00857 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00857 Viun-Chr2 19224576 19226877 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun2g00857 zf-C2H2_6 9.9e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00857 2 19224576 19226877 Viun2g00857 2 19224576 19226877 ECH