Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00616 ATGGGACCTTTCACTTACCTCTTCCCACTTTTTCTTCTGGGGTGCTTCTCTCCGTTAACACTCTCTCGAACCACACCGCACACTCCCAAAACGACACTCCTCGACGTCGTTTCCTCCCTTCGAAACGCGCACAATGCGGTCGCTTCACCCCATTACCACCCTCTCCAACGACAGGAAGAACCCTCTCCTCTATCGTCGTTCGCTGTTCATCTACATTCCCGTGCCTCAATTCAAAAACCCTCGCACAGCGACTATAAATCCCTAACCCTTGCTCGACTCGAGCGCGACTCAGCCCGAGTCAGAGCCCTGCAAACTCGTTTAGATCTTGCTCTGAACCGCGTCTCGAACTCGGATCTCCACCCGGCCGAGTCACGCCCCGAGTTCGAAGCCAATGCGCTCCAGGGACCAATCGTCTCGGGAACGAGTCAGGGAAGCGGTGAGTACTTCCTCCGAGTCGGAATCGGGAAGCCACCTAGTCAGGCCTACGTGGTTCTGGACACAGGAAGCGACGTCAGTTGGATCCAATGCGAACCATGCTCCCAATGCTACCAACAATCCGACCCGATTTTCAGCCCGCTTTCGTCCTCTTCCTACTCGCCTATCCACTGCGACGCCCCGCAGTGTAAATCCCTCGACCTCTCCGAGTGCCGCAATGGAACCTGCCTCTACGAAGTCTCATACGGCGACGGATCTTACACCGTCGGCGAGTTCGCCACGGAGACCGTCACTCTCGGCGCGTCGGCAGTATCCGGCGTCGCCATCGGCTGCGGCCACAACAACGAAGGACTATTCGTCGGCGCCGCTGGTCTGCTCGGTCTCGGTGGCGGAAAGCTCTCGTTTCCGGCGCAGGTCAATTCGACTTCGTTTTCGTACTGCCTCGTGGACCGCGACTCCGACGCCGTTTCCACTCTTGAGTTCGACTCGCCGATGCCGCACAATGCCGTCACCGCGCCGCTGTTGCGGAACCCCGAGCTCGACACGTTCTATTACCTCGGCTTGAAAGGAATCAGTGTTGGCGGCGAGACTCTCCCGGTACCTGAGTCGAGCTTTTCTGTCGACGCCACCGGAGGAGGTGGAATCATTGTCGATTCCGGCACGGCTGTGACACGGCTACGGAGCGAGGTGTACGACGCACTCCGCGACGCATTCGTGAAGGGGGCGAAGGGGTTGCAGAAGGCGAACAGTGTGTCGTTGTTTGACACGTGCTACGACTTGTCGTCGAGGAACAGTGTGGAGGTGCCGACTGTGACGTTTCATTTTCCTGAGGGGAGGGAGTTACCGTTACCGGCGAAGAATTACCTGATACCGGTTGACTCAGTAGGGACGTTTTGCTTCGCGTTTGCACCAACAACGTCGTCGTTGTCAATCATTGGGAACGTGCAGCAACAAGGGACACGTGTCGGTTTCGATATCGGTAACTCGCTCGTTGGATTCTCTGCCAACAGCTGCTAG 1452 0.5744 MGPFTYLFPLFLLGCFSPLTLSRTTPHTPKTTLLDVVSSLRNAHNAVASPHYHPLQRQEEPSPLSSFAVHLHSRASIQKPSHSDYKSLTLARLERDSARVRALQTRLDLALNRVSNSDLHPAESRPEFEANALQGPIVSGTSQGSGEYFLRVGIGKPPSQAYVVLDTGSDVSWIQCEPCSQCYQQSDPIFSPLSSSSYSPIHCDAPQCKSLDLSECRNGTCLYEVSYGDGSYTVGEFATETVTLGASAVSGVAIGCGHNNEGLFVGAAGLLGLGGGKLSFPAQVNSTSFSYCLVDRDSDAVSTLEFDSPMPHNAVTAPLLRNPELDTFYYLGLKGISVGGETLPVPESSFSVDATGGGGIIVDSGTAVTRLRSEVYDALRDAFVKGAKGLQKANSVSLFDTCYDLSSRNSVEVPTVTFHFPEGRELPLPAKNYLIPVDSVGTFCFAFAPTTSSLSIIGNVQQQGTRVGFDIGNSLVGFSANSC 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00616 483 FunFam Aspartyl protease family protein 2 308 483 - -
Viun2g00616 483 FunFam Aspartyl protease AED1 128 307 - -
Viun2g00616 483 Pfam Xylanase inhibitor C-terminal 329 479 IPR032799 -
Viun2g00616 483 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 163 174 IPR001969 GO:0004190|GO:0006508
Viun2g00616 483 SUPERFAMILY Acid proteases 141 483 IPR021109 -
Viun2g00616 483 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 360 371 IPR001969 GO:0004190|GO:0006508
Viun2g00616 483 PANTHER ASPARTYL PROTEASES 49 477 IPR001461 GO:0004190|GO:0006508
Viun2g00616 483 ProSiteProfiles Peptidase family A1 domain profile. 148 479 IPR033121 -
Viun2g00616 483 Gene3D Acid Proteases 307 483 IPR021109 -
Viun2g00616 483 Gene3D Acid Proteases 122 306 IPR021109 -
Viun2g00616 483 Pfam Xylanase inhibitor N-terminal 148 305 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00616 Viun-Chr2 14995760 14997808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00616 138 483 Miscellaneous Gene Families AT1G77480 26.440 1.25e-23 101
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00616 2 14995760 14997808 Viun2g00616 2 14995760 14997808 ECH