Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00468 ATGGAGATGAAAAAGGAATTAGATGATCAAGGACAGTGTTCCTCTCAACCAATCAACAACAATAACAATAACAACAGCATTCAAAGCTACCAAGAGCAACTTCTCCTTCAACAACAGATGCATCAGCAGCAACAAAACAGTGACAACATCTTCGGGGGTTCAAGAGGTTTAATGTTCCCTGAAGTTACTCCAATCATGCTGCAACCATGGTCCATGCCTCCGGTTCACTCATTCAACCCGGGTCCGGTTCACTACAACAATAACACCAACCCTGTCCGAGACCATCATGACCAAACGTTTATAGTCCCTCCCACACCTTCACCCTATTCGAGCTTCTTCAGCAGAAGGGTCCCTTCTCTTCAATTTGCATACGAGAGTCCTTCTGATCACCACCATCTAAGGATCATATCCGACACCCTCGGACCTATGGTTCAACCCGGTTCAGCACCTTTTGGACTCCAAGCCGAGTTGGGAAAAATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCAGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGGAGTTTATTGCCCAACACTACCAAAACAGATAAAGCTTCGTTGCTAGCGGAAGTGATTGAGCACGTGAAGGAACTGAAGCGCGAAACCTCTCTGATAGCAGAAAGCAGTGCAGTGCCAACGGAGGCAGACGAGTTGACAGTGGATGCAGCAGACGAAGATGGAAAGTTTGTGATCAAAGCCTCACTGTGCTGTGAAGATAGGTCAGATCTCTTACCAGACCTCATAAAAACGTTGAAGGGCTTGAAGCTCAGAACCCTCAAGGCTGAGATCACATCGCTTGGTGGGCGTGTGAAGAACGTGTTGGTCATTACTGGTGACGAAGAAAGTTCAAACAGCAATGGAGAACAAAGCACGCAGCAGCAACAACAGTACTGTATTACCTCAATACAAGAAGCACTCAAGGCAGTGATGGAGAAGAGTGGTGGTGGAGATGAATCAGCTTCTGGGAATGTTAAGCGCCAACGGACTAATAATATCAATTTTCTTGAACAAAGGTCTTTGTAA 1092 0.4606 MEMKKELDDQGQCSSQPINNNNNNNSIQSYQEQLLLQQQMHQQQQNSDNIFGGSRGLMFPEVTPIMLQPWSMPPVHSFNPGPVHYNNNTNPVRDHHDQTFIVPPTPSPYSSFFSRRVPSLQFAYESPSDHHHLRIISDTLGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIEHVKELKRETSLIAESSAVPTEADELTVDAADEDGKFVIKASLCCEDRSDLLPDLIKTLKGLKLRTLKAEITSLGGRVKNVLVITGDEESSNSNGEQSTQQQQQYCITSIQEALKAVMEKSGGGDESASGNVKRQRTNNINFLEQRSL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00468 363 CDD ACT_UUR-ACR-like 257 333 - -
Viun2g00468 363 MobiDBLite consensus disorder prediction 333 352 - -
Viun2g00468 363 CDD bHLH_AtAIG1_like 167 245 - -
Viun2g00468 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 227 IPR036638 GO:0046983
Viun2g00468 363 SMART finulus 178 227 IPR011598 GO:0046983
Viun2g00468 363 Pfam Helix-loop-helix DNA-binding domain 175 221 IPR011598 GO:0046983
Viun2g00468 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Viun2g00468 363 PANTHER TRANSCRIPTION FACTOR BHLH30 30 356 IPR045847 GO:0003700|GO:0006355
Viun2g00468 363 MobiDBLite consensus disorder prediction 1 25 - -
Viun2g00468 363 Gene3D - 167 227 IPR036638 GO:0046983
Viun2g00468 363 FunFam transcription factor bHLH30 167 230 - -
Viun2g00468 363 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00468 Viun-Chr2 9886198 9890323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00468 25 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 54.223 1.37e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g00468 HLH 8e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00468 2 9886198 9890323 Viun2g00468 2 9886198 9890323 ECH