Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00397 ATGTTGGCCTCCACACTCCTACCTTCCTCCAAGCTCCACCCTTCTCATTTCGTTCCTCCCATCACCGTTGCAGAAGCTCCTCCGAGAAACAGAGTCGCAATCTTTTCCAAATCCACCCCCAAACTCGCTTTCGTTGCCAGGGCCACCAATGACGCTCGTGACGGCGCCGTTGACGCAACCTCTTCGCCGGGTGTTGATGCAGTAACAAGTACATCTTCTGGCCTTGGTGATGGTTATGTGGCCTTGTTTGTTCGTATGTTAGGCCTTGATCGTGATCCTTTGGATAGAGAACAAGCTATAATTGCCCTCTGGAAGTATTCACTCGGTGGAAAGAAGTGTATAGACACTATAATGCAGTTTCCTGGTTGTATTAATCTTGTTGTGAACCTCCTCAGATCAGAGTCTAGTTCAGCATGCGAGGCAGCTGCAGGCCTTCTGCGATCATTGTCTTCAGTCAATCTGTATAGAAATTCTGTAGCTGACAGTGGAGCGATAGAAGAGATAAACAGATTGCTGAGACAATCTTCCTTGACTCCTGAGGTAAAGGAGCAGAGTTTGACTACACTGTGGAATTTATCTGTTGATGAGAAGCTCTGGATTAAAATTTCAAAGACTGAGATCCTTCCTGTAGCTATTAAGTACCTTGAAGATGAGGACATTAAAGTGCAGGAGGCTGCAGGGGGCATTTTGGCAAATTTAGCACTGAGCCGTGTTAACCACAGCATCATGGTTGAAGCGGGTGTTATACCGAAATTGGCAAAGTTCTTAACATCTAATCTGGAAGGATCTAAAGTTCTTAGGAAGGAAGCAAGGAACACATTGCTAGAACTTTTTAAGGACAATGATTATAAAGTTCTTGTTATGGAGGAAGGTCTGGTTCCTGTGCCATTAATTGGTGCTGCAGCCTTTAAGTCATTCAACCCAGGCTTACATTTGTGGCCCACATTACCTGATGGTACAGAAATTGAAAGGACCTCTAGACAGCCATCGCGATTTGGTGCTTCGGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAACTTAGAGGAGGCAAAGATCAGTGCAATTGTTGGACGAACCCAACAACAATTCCTTGCTCGTGTTGGAGCCTTACAAATGGAAGAAAAAATTATACCTAATTCTGATTGCTCAAATGATCAGAGGTTTACACTTTTACCTTGGATGGATGGTGTTGCTCGTTTAGCACTGATATTAGAACTGGAAGACAAGTCTGCATCAATTAAGGCTGCAGAATCAATTGCCACTGCATGTATCAATGAACATATGCGTATTGCATTCAGGGAGGCTGGAGTAATTAGGCATTTAATAAGGCTTTTGAACTGTGATGACGAAGCAGTCCAGTTGGCGGTAACACAAGCTTTGGAAAGGCTGTCTGTTAGCAATATTGTTTGCCAGGTAATTGAAGCTGAAGGGGTTTTAGGTCCTTTAGTTAGCATTTTGAAATGCTCGGGGACAGTGGGAACTATTGTGGAAAAGTCTTTGAGTATACTAGCAAGGATATTTGACGCAACTGGAGTTAATGGATCTGAAAAGGCATTTGGTGGAGCAAAAAGTGACTGTGTTTCAACCGGGTTTAGTAGTACTGAACAAACTGTATCAAAAACATTCTCAAGGAATGATATACTGGATTCTGTTTTCATTTCACACCTTGTTGAGATTCTGAAGTCCTCTCCCCCCAATTTACAAGAAAAAGCTGCATCTGTGCTTGAGTTTGTGGCATTGACTGACCCAACTCTGGCCCCAATTTTATCTTTGGATATTGAATCTGGTCTCAGTTCTGCTTTTCAGCAAAAGATTTTGAAAATTTCAGGGAACATGGAATCTGATGCAGAAGATCAGTTTTACGAAGCATATGCAATAGAATTTGAAGAAGCTGGTCTGGCAATATCTGCAGCATCGCGATTATTGACAATACTGCTCGATTGCGAGCAGTTCCGCAACAAAATAAATGCCCCCCACTTCATTGATTTGCTTCGCGGAATCCTCAGGTCCAATATTCCTCTCCGCAGCAAAGATTGGGTAGCTGCATGCCTCCTTAAACTGAGTTCTCTCTCTGGCTCCATCACCAGTGTCTATCCAATCAACGTGGAAGTTACACTTTACGAGACAATCCCAAGACTTCTAGAACAGATCAAAACTTCATTCTCCCCAGAAGCACAAGAAACGGCTGTGGTAGAACTCAATAGAATAATATCTGAAGGAGTGGTAGATTCCACAGACGAAGCTATTATTTCAGAGGGGGCAATAAGCTCATTGGTGATGCTGCTTGAAGAAGGTAGTGATAGGGCTGTTGAAGCAAGCTTGGCAATACTGCACAATCTGAGTATGAACAATGAGAACCATTCAGCACTGGTCGCTGCTGGAGCCGTGCAGGTCTTGAAAAGAATTGTTCTGGCAAACAGACCACACTGGGAACGGGCACTTCTTTTACTCAGGATTTTGCAACCGTGA 2478 0.4334 MLASTLLPSSKLHPSHFVPPITVAEAPPRNRVAIFSKSTPKLAFVARATNDARDGAVDATSSPGVDAVTSTSSGLGDGYVALFVRMLGLDRDPLDREQAIIALWKYSLGGKKCIDTIMQFPGCINLVVNLLRSESSSACEAAAGLLRSLSSVNLYRNSVADSGAIEEINRLLRQSSLTPEVKEQSLTTLWNLSVDEKLWIKISKTEILPVAIKYLEDEDIKVQEAAGGILANLALSRVNHSIMVEAGVIPKLAKFLTSNLEGSKVLRKEARNTLLELFKDNDYKVLVMEEGLVPVPLIGAAAFKSFNPGLHLWPTLPDGTEIERTSRQPSRFGASELLLGLNIDDKNANLEEAKISAIVGRTQQQFLARVGALQMEEKIIPNSDCSNDQRFTLLPWMDGVARLALILELEDKSASIKAAESIATACINEHMRIAFREAGVIRHLIRLLNCDDEAVQLAVTQALERLSVSNIVCQVIEAEGVLGPLVSILKCSGTVGTIVEKSLSILARIFDATGVNGSEKAFGGAKSDCVSTGFSSTEQTVSKTFSRNDILDSVFISHLVEILKSSPPNLQEKAASVLEFVALTDPTLAPILSLDIESGLSSAFQQKILKISGNMESDAEDQFYEAYAIEFEEAGLAISAASRLLTILLDCEQFRNKINAPHFIDLLRGILRSNIPLRSKDWVAACLLKLSSLSGSITSVYPINVEVTLYETIPRLLEQIKTSFSPEAQETAVVELNRIISEGVVDSTDEAIISEGAISSLVMLLEEGSDRAVEASLAILHNLSMNNENHSALVAAGAVQVLKRIVLANRPHWERALLLLRILQP 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00397 825 SUPERFAMILY ARM repeat 83 510 IPR016024 -
Viun2g00397 825 SUPERFAMILY ARM repeat 414 805 IPR016024 -
Viun2g00397 825 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 164 IPR000225 GO:0005515
Viun2g00397 825 Pfam Armadillo/beta-catenin-like repeat 428 467 IPR000225 GO:0005515
Viun2g00397 825 SMART arm_5 745 785 IPR000225 GO:0005515
Viun2g00397 825 SMART arm_5 428 468 IPR000225 GO:0005515
Viun2g00397 825 SMART arm_5 542 583 IPR000225 GO:0005515
Viun2g00397 825 SMART arm_5 195 235 IPR000225 GO:0005515
Viun2g00397 825 SMART arm_5 152 194 IPR000225 GO:0005515
Viun2g00397 825 SMART arm_5 236 279 IPR000225 GO:0005515
Viun2g00397 825 SMART arm_5 110 151 IPR000225 GO:0005515
Viun2g00397 825 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 756 798 IPR000225 GO:0005515
Viun2g00397 825 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 51 824 - -
Viun2g00397 825 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 163 196 IPR000225 GO:0005515
Viun2g00397 825 Gene3D - 631 823 IPR011989 -
Viun2g00397 825 Gene3D - 359 630 IPR011989 -
Viun2g00397 825 Gene3D - 76 304 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00397 122 256 U-box Gene Family AT2G23140 31.852 5.69e-08 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00397 2 7797517 7826387 Viun2g00397 2 7797517 7826387 ECH