Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03052 ATGAAGAGGGATTACCAAGACAGCTGCGCCGGAGGGGGTGTCAAGGGTGAGTGCTCCTCAATGCCAAACGGCAAGGCCAAGATGTGGGAGGAAGACCGCCACCAGCAGGGGGGAGGGATGGATGAGTTGCTGGCGGCGTTGGGCTACAGGGTCCGTGCTTCCGACATGGCTGACGTCGCACAGAAGCTCGAGCAGTTGGAGATGGTCATGGGGAGTGCCCAGGAAGACGGAATTTCCCACCTTGCTTCCGACACCGTTCACTACGACCCTACGGATCTCCATTCATGGGTCCAGAGCATGCTGGCTGAACTCAACCCCGAACCCACCAACACCATCCTCGATCCCTCCTCCTTCCTCATCCAAAACCCCTCCCACTCTTCCTCCATCCTCACCACCAACTCACGCGTTTTCAACGACGACTCCGAATATGACCTCAGAGCCATTCCTGGGATAGCCGCATACCCTCAACCCGCCCCCACCATTAACTCCTCCACTGCCACAACCACCACCACCACTACCACAACCACCAAAACCGTCGAAGAAATCGAAACGCCCACCAACAAGCGCCTCAAGGCTTCCCCAATTGAATCCTCAGAGTCCGCTTCGGAGCCCACGCGCCCTGTAGTCCTCGTTGACTCGCAGGAAGCCGGCGTGCGTCTGGTGCACACTCTCATGGCCTGCGCGGAGGCCGTCCAGCAGGAGAATCTGAAGCTGGCGGACGCACTGGTGAAGCACGTGGGCATACTCGCAGCGTCGCAAGCCGGCGCCATGAGGAAAGTGGCGTCGTACTTTGCCCAGGCCCTGGCGCGTCGAATCTATGGCATCTTCCCTGAGGAAACCCTCGATTCCTCCTTCTCCGACCTTCTCCACATGCACTTCTACGAGTCCTGCCCCTATCTGAAGTTCGCACACTTCACCGCCAACCAGGCCATTCTCGAGGCCTTCGCCACCGCTGGGAGAGTCCACGTCATCGATTTCGGCCTCAAACAGGGGATGCAGTGGCCCGCCCTCATGCAGGCACTCGCATTGCGCCCTGGCGGTCCCCCAACTTTCCGCCTTACCGGAATCGCCCCGCAGCCCGACAACACTGACGCGCTGCAGCAAGTGGGCTGGAAGTTGGCCCAGTTAGCCCAAACCATCGGCGTCCAGTTCGAATTCCGCGGATTCGTCTGCAGCAGCCTTGCAGATCTCGACCCGAACATGCTTGAGATCCGTCCCGGAGAAGCCGTCGCTGTCAACTCCGTCTTCGAGCTCCATCGCATGCTGGCCCGACCCGGATCCGTCGACAAGGTCATGGACACAGTGAAAAAGCTCAACCCCAAAATCGTAACCATCGTGGAGCAAGAGGCGAACCACAACGGACCGGTTTTCTTGGACCGGTTCACTGAAGCCTTGCATTACTATTCGAGTCTCTTTGACTCGCTGGAGGGTTCTTCCACCTCCACAGGGTTGGGTTCGCCGAATCAGGATCTGTTGATGTCGGAGTTGTACCTTGGGAGACAGATATGCAACGTGGTGGCGTACGAAGGCGTGGAGCGCGTGGAGCGTCACGAGACTTTGAGCCAGTGGAGAGGAAGAATGGGCTCTGCCGGGTTTGACCCAGTTCATCTCGGGTCTAACGCGTTCAAGCAAGCTAGTATGTTGCTGGCTCTATTCGCAGGCGGTGACGGGTACAGGGTGGAGGAGAATAACGGCTGCCTCATGCTTGGGTGGCACACTAGGCCACTCATCGCCACCTCCGCGTGGAAGCTTCCTGCGCCCGAGTCCTAG 1770 0.5893 MKRDYQDSCAGGGVKGECSSMPNGKAKMWEEDRHQQGGGMDELLAALGYRVRASDMADVAQKLEQLEMVMGSAQEDGISHLASDTVHYDPTDLHSWVQSMLAELNPEPTNTILDPSSFLIQNPSHSSSILTTNSRVFNDDSEYDLRAIPGIAAYPXQPAPTINSSTATTTTTTTTTTKTVEEIETPTNKRLKASPIESSESASEPTRPVVLVDSQEAGVRLVHTLMACAEAVQQENLKLADALVKHVGILAASQAGAMRKVASYFAQALARRIYGIFPEETLDSSFSDLLHMHFYESCPYLKFAHFTANQAILEAFATAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGXPQPDNTDALQQVGWKLAQLAQTIGVQFEFRGFVCSSLADLDPNMLEIRPGEAVAVNSVFELHRMLARPGSVDKVMDTVKKLNPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSSTSTGLGSPNQDLLMSELYLGRQICNVVAYEGVERVERHETLSQWRGRMGSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPAPES 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03052 591 ProSiteProfiles GRAS family profile. 212 585 IPR005202 -
Viun1g03052 591 FunFam DELLA protein GAI 39 104 - -
Viun1g03052 591 SMART DELLA_2 41 114 - -
Viun1g03052 591 Gene3D - 39 104 IPR038088 -
Viun1g03052 591 Pfam GRAS domain family 221 585 IPR005202 -
Viun1g03052 591 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 179 581 IPR005202 -
Viun1g03052 591 Pfam Transcriptional regulator DELLA protein N terminal 41 108 IPR021914 -
Viun1g03052 591 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03052 Viun-Chr1 38952567 38954987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03052 42 586 GRAS Transcription Factor Family AT3G03450 63.653 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun1g03052 GRAS 5.3e-138 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03052 1 38952567 38954987 Viun1g03052 1 38952567 38954987 ECH
Viun1g03052 1 38952567 38954987 Viun8g02156 8 31856753 31858912 PCT