Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02604 ATGATGGAGAGAGGGTGGAAGGCTAACACTGTTGAGATTTCACCAAATTGTCCCAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGTTCAACTCAACCACGCTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGTTCCCTCCGTAACGTACCAATTGGCGGTGGCTGCCGGAAAAGTAGAAGGGGTAAATATAATAAAGCCCTAAGACAAGCCCATAGCCCAGTTGGGCTTTCTGATGATTTAAGGCCTTCATCTTCAGTGGTGTCTGATGGGCCAAATATCGATCTTGCACAAGTGTATGCAAGTTTTCTGAATGTGAAGCCAGATGAAGTGCAAACAGTTTCTCCTGAGTATTCAAGCATAGTTAACACTAGTGCTTTGTCTGAAGAGCATGGTCGTTTGCATTTTCATGAACAGCCCAGAGAATCCCATTTTGGTGAGGATATCGAAATGTACTTTTGCGGGTTGAACTCTATCCAGAAGCATCAGGAGTATAGTAGCAGTCATGATACAAGAGTTACAAAAACAAATTTTGAGTTGCCTCCATTACCAGGTGAAGTTGCAGAAACCTCACATGGTAATGTGTTGTGGTCCAATTCTGAGATGATGGTGGATCATGCTTTGCAAGCCACCCAATGGCCCCTTCTTGGACCAGAAGCTTATGATGCAGACTTCTTCATGGGTAACTGTTGGAGCCACTTCGATTTTCCAAGGGATGCTTCTTTTTCCACGCCTTGA 762 0.4475 MMERGWKANTVEISPNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRGKYNKALRQAHSPVGLSDDLRPSSSVVSDGPNIDLAQVYASFLNVKPDEVQTVSPEYSSIVNTSALSEEHGRLHFHEQPRESHFGEDIEMYFCGLNSIQKHQEYSSSHDTRVTKTNFELPPLPGEVAETSHGNVLWSNSEMMVDHALQATQWPLLGPEAYDADFFMGNCWSHFDFPRDASFSTP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02604 253 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 165 IPR045174 GO:0003700|GO:0006355
Viun1g02604 253 ProSitePatterns Zinc finger Dof-type signature. 17 53 IPR003851 GO:0003677|GO:0006355
Viun1g02604 253 Pfam Dof domain, zinc finger 16 69 IPR003851 GO:0003677|GO:0006355
Viun1g02604 253 ProSiteProfiles Zinc finger Dof-type profile. 15 69 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02604 Viun-Chr1 36142634 36143554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02604 6 248 C2C2-Dof Transcription Factor Family AT3G52440 40.467 2.65e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun1g02604 zf-Dof 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02604 - - gmx:778109 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02604 1 36142634 36143554 Viun1g02604 1 36142634 36143554 ECH
Viun1g02604 1 36142634 36143554 Viun7g00180 7 1368214 1369403 PCT