Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01431 ATGTCTCAGACAGAGAAGGATCCGGGTATCAGGCTATTTGGCAGGAAGATTCCGGTGCCGGAATGTCAGATTCCGACCAACTCTGGACCCACGGATGCTTGCAGCAGCATAAAAAAGGCGGCGGAACTGGAAATACCTAGTGAATGTGGAGAAAACTCTGAAAAACAAGAAAACTCTTCTGATTCAAGGGATAGCAAACAAGAGTTCCAGCATAAAGTGCAGGAAAATGAGGCAGTAGTAAACCCCAAACCAGTGGAAGATAACACGGAGAATGGTGGCTCAGACCAAGATAAAGTCTTAAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGTAACAGTTTGGACACCAAGTTTTGTTATTTTAACAACTACAACGTTAACCAACCCAGGCATTTCTGCAAGAACTGTCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGTGCTGGGAGACGGAAGAACAAACACCTAGCGTCGCAATACCGACACATTATAGTATCCTCGAATGGAATTCCTGCGTCCAGACTAGAATCTGAGGACACATCTGGTTTCCAACATGTCACAAGTCTTGAATCCTCGGTTCCTTTCAGGTCTTCAGCAGATAGCAGCACTGTTTTGAAGTTTGGGCCAGATACCCCTCTCTGTGAATCAATGGATTCAATGCTTAATCTTAGAGACGAGAGAAGATGTGTTGATGCAAGTTCTATAAACCGTGTAGAGTATGCTGGGGAACCATCGTTATGTGGATCTTCTGTGACGAACAATGGAAATGAATTATCAGAACACAAGACATCAAATTGGTTACAATGTTACCCTGTTCCTCCATGGGTGTTAACTTATCCTGGTTGGAACAATGTGAGTTCCATGGAGGCAGTTCATCAGTCTTCAGCACCAATGTGTAGTCCATACAACACTGGTCCTGCACCAATGCAATGGGGTCCAACAGCAATGGTGGCAATTCCTGGCATGTGCCCATCCAGCATTCCTTTGCAGCTTGTTCCACCATCGTGCTGGAGTGGAACAACACTCTGGAATGCTGGAACTGGGGCTATGTCCATAGGATCCAATGCTTGTCTTTCGCCGTCGTCCTCCACGAGTAACAGTTGCTGCTCAGGCAATGGCTCCCCAACCCTTGGAAAACATTGTAGAGACACTGTTTTTGCTGATGAAGAGAAATCAGACAAGTGTGTTTTGGTTCCAAAGACCATCAGAACTGATGCCTCTAACGAAGCCTCAAAAAGTCCTATGAGGGCTGCATTAACCATCAAGCCTGATCAACATAATTCTCTGTCAAATGGTGATGTTTTGAAGAAGATTGATCCAAAAGAAGGCAAAGATCGCGTGTTGGGTGCCTCTCAAATCTTGGAAGCCAATCCAGCAGCTATTTCTCGTGCTCATGCATTTCAGGAGAGCATATAG 1434 0.4512 MSQTEKDPGIRLFGRKIPVPECQIPTNSGPTDACSSIKKAAELEIPSECGENSEKQENSSDSRDSKQEFQHKVQENEAVVNPKPVEDNTENGGSDQDKVLKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVSSNGIPASRLESEDTSGFQHVTSLESSVPFRSSADSSTVLKFGPDTPLCESMDSMLNLRDERRCVDASSINRVEYAGEPSLCGSSVTNNGNELSEHKTSNWLQCYPVPPWVLTYPGWNNVSSMEAVHQSSAPMCSPYNTGPAPMQWGPTAMVAIPGMCPSSIPLQLVPPSCWSGTTLWNAGTGAMSIGSNACLSPSSSTSNSCCSGNGSPTLGKHCRDTVFADEEKSDKCVLVPKTIRTDASNEASKSPMRAALTIKPDQHNSLSNGDVLKKIDPKEGKDRVLGASQILEANPAAISRAHAFQESI 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01431 477 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Viun1g01431 477 PANTHER CYCLIC DOF FACTOR 2 1 476 IPR045174 GO:0003700|GO:0006355
Viun1g01431 477 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Viun1g01431 477 MobiDBLite consensus disorder prediction 44 73 - -
Viun1g01431 477 Pfam Dof domain, zinc finger 104 161 IPR003851 GO:0003677|GO:0006355
Viun1g01431 477 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01431 Viun-Chr1 25703047 25706225 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01431 7 476 C2C2-Dof Transcription Factor Family AT5G39660 34.393 1.43e-64 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun1g01431 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01431 - - gmx:100813787 805.053