Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00354 ATGTGCCGTGGTCCAGAGAAATCAAAATCTCTATCAACACCATCTTCATCTGCTGTAGAACGTTCAACTAGAGCCGAAGACATGAAAGACCTAACTGTTTGTGCAGAAGATTCTTTTTCCTGCCTACTCGAGCTTGCTTCTAACAATGATTTTGAAGATTTCAAGTTAGCTTTAGATAGCGATATTTCTCTAATAAACAAAGTTGGGCTCTGGTATGTCCGCCAGATTGGATCCAAACAAATTGTTCAGGAGCACCGAACTCCTTTAATGGTTGCTTCAATGTATGGGAGTGTGGATGTTCTAAAACTTATACTGTCGTGTCCCGAGGTTGATGTCAATTTCTCCTGCGGGACAGATAGAAGCACTGCCCTTCATTGTGCTGCATCAAGTGGTTCTGTTAATGCAGTTGATGTTGTGAAATTGCTCTTGTCATCTGGTGCTGACATCAGATGCGTGGATGCTAATGGAAATCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGCTCGAAGGTTTTAAAGCAACTCTTGAAGATCTACTTTCAGATAGTGGTTGTGATGGGTCTGTTGGTGACTGTTTTATTCCAGTAGCAGTTAATTCATCATGTGCGGATTCAGCGACTCATTTTTTATCACCTGAAAATGGGTTGCCATCCTCTCCTATGGCGTCCAAGTTTACTGATGCAACTGTTAATTCTGCCTCCGAGAAGAAAGAATATCCAATTGACCCATCACTTCCTGATATAAAGAACAGCATATATGCTACAGATGAGTTTCGCATGTTTTCATTCAAGGTTCGACCTTGTTCCCGTGCATACTCTCATGATTGGACTGAATGTCCTTTTGTTCATCCTGGTGAGAATGCTCGTAGGAGAGACCCCAGAAAGTTCCATTACAGTTGTGTGCCATGCCCTGAATTTAGAAAGGGGGCTTGTAGACGCGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTACACCCTGCCCAATATCGAACAAGGCTGTGCAAAGACGGTGTTAGCTGTAATAGAAGGGTTTGTTTTTTTGCCCACACCGCAGAAGAGCTGCGTCCATTGTACGTGTCCACTGGATCCGCGGTTCCTTCACCCCGTTCGTCTGCTTCTACTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTCTTTCCCGGTTCACCTTCGTCACTTTCTGCCATGTCTCCATCTCCCTTCGCTCAGCAAATGTCTCCATCTACAGGTGGCATTTCTCACTCATCTTCTGCTTGGCCGCAGCCGAATGTTCCAGCTCTTCATTTACCAGGAAGCAATATTCAAACTAGTCGACTAAGGTCTTCTCTTAATGCTCGTGACATGCCGCCTGAAGACTTGGATGTGTTGCAAGATTTTGATGGTCAGCAACACCTTTTGAATGACCTGAGCTGTTTCTCTCAGCCCCGTCCTGGTGCCATTTCAGTTAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCTGCTGAAATTTCTTCATCTCCTAGGTATTCTGACCCAGCAGCGGCTTGTGTATTTTCCCCAACACACAAATCAGCTGTTTTTAACCAGTTTCAACAACTTCAAAGTTCGTTATCACCCATAAATACAAGTGTCTCATCTCCTAGGAATGTTGAGCATACTCTTTTACAGGCTTCATTTGGTGTCTCTTCCCCGGGAAGGATGTCACCGAGAAGTTTGGAACCAATCTCTCCAATGAGCGCCCGATTATCTGCATTTGCACAGCGTGACAAGCAGCAGCAGCAGCAGCAGCTGCGGAGTCTTAGTTCAAGGGATCTTGGTGCCCACAATCCTGTCTCAATTGTTGGGTCCCCAGGTAACTCCTGGTCTAATTGGGGTTCTCCTCATGGGAATGGAAAGGTAGATTGGTCGGTGAATGGAAATGAGTTAGGTCGATTGCAAAGGTCATCCTCATTTGAGCTTGGAAACAACGGGGAGGAGCCTGATCTGTCCTGGGTTCAATCCCTCGTGAAAGAATCTCCATCCGAGATTAAAGAGAAGTTGGCAGGTTCTGGTGGCCCTGTTGTATCTGCAGATGGGCAGAATTCCAATCCTCAAGTTGAGTCTATTGATCACTCTGTTCTAGGAGCATGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAA 2184 0.4528 MCRGPEKSKSLSTPSSSAVERSTRAEDMKDLTVCAEDSFSCLLELASNNDFEDFKLALDSDISLINKVGLWYVRQIGSKQIVQEHRTPLMVASMYGSVDVLKLILSCPEVDVNFSCGTDRSTALHCAASSGSVNAVDVVKLLLSSGADIRCVDANGNRPVDVIVVPPKLEGFKATLEDLLSDSGCDGSVGDCFIPVAVNSSCADSATHFLSPENGLPSSPMASKFTDATVNSASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGVSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASTPNVMDMAAAMSLFPGSPSSLSAMSPSPFAQQMSPSTGGISHSSSAWPQPNVPALHLPGSNIQTSRLRSSLNARDMPPEDLDVLQDFDGQQHLLNDLSCFSQPRPGAISVSRSGRSKTLTPSNLDDLFSAEISSSPRYSDPAAACVFSPTHKSAVFNQFQQLQSSLSPINTSVSSPRNVEHTLLQASFGVSSPGRMSPRSLEPISPMSARLSAFAQRDKQQQQQQLRSLSSRDLGAHNPVSIVGSPGNSWSNWGSPHGNGKVDWSVNGNELGRLQRSSSFELGNNGEEPDLSWVQSLVKESPSEIKEKLAGSGGPVVSADGQNSNPQVESIDHSVLGAWLEQMQLDQLVV 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00354 727 Gene3D - 298 360 - -
Viun1g00354 727 Gene3D - 5 207 IPR036770 -
Viun1g00354 727 Pfam CCCH-type zinc finger 302 322 IPR041367 -
Viun1g00354 727 SMART c3hfinal6 332 355 IPR000571 GO:0046872
Viun1g00354 727 SMART c3hfinal6 297 323 IPR000571 GO:0046872
Viun1g00354 727 MobiDBLite consensus disorder prediction 591 612 - -
Viun1g00354 727 Pfam Ankyrin repeats (3 copies) 69 151 IPR002110 GO:0005515
Viun1g00354 727 MobiDBLite consensus disorder prediction 590 633 - -
Viun1g00354 727 Coils Coil 589 609 - -
Viun1g00354 727 MobiDBLite consensus disorder prediction 619 633 - -
Viun1g00354 727 MobiDBLite consensus disorder prediction 1 24 - -
Viun1g00354 727 PANTHER UNKEMPT FAMILY MEMBER 44 678 IPR045234 -
Viun1g00354 727 SMART ANK_2a 84 114 IPR002110 GO:0005515
Viun1g00354 727 SMART ANK_2a 119 151 IPR002110 GO:0005515
Viun1g00354 727 SUPERFAMILY Ankyrin repeat 32 164 IPR036770 -
Viun1g00354 727 MobiDBLite consensus disorder prediction 401 424 - -
Viun1g00354 727 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Viun1g00354 727 FunFam Zinc finger CCCH domain-containing protein 66 255 323 - -
Viun1g00354 727 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Viun1g00354 727 MobiDBLite consensus disorder prediction 684 705 - -
Viun1g00354 727 ProSiteProfiles Zinc finger C3H1-type profile. 302 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00354 Viun-Chr1 2492961 2498398 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun1g00354 Ank_2 5.5e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00354 1 2492961 2498398 Viun11g00085 11 523773 527375 ECH
Viun1g00354 1 2492961 2498398 Viun1g00354 1 2492961 2498398 ECH
Viun11g00085 11 523773 527375 Viun1g00354 1 2492961 2498398 PCT