Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun11g00708 | ATGGCGAAAACGAGGCCAGGCAGAAAGGACTTGGACTCGTACACCATAAGAGGAACCAACAAGGTCGTCCGAGCCGGTGATTGCGTTCTGATGCGGCCATCGGACACGTCCAAGCCCCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAACAACGTGAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCCATTGGGGGTCGCAGACAGTTCCATGGTGCCAAAGAGCTTTTTCTCTCCGACCACTATGATGTGCAGAGTGCGCACACCATCGAAGGCAAATGCGTAGTACACTCTTTCAAGAACTACACCAAGCTCGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCCACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCATATAACCCGGATGACCTCATGGTACAATGTGAAGGGTGCAAGGATTGGAATCATCAATTATGTGATCTCACCACCTGCAGAATGAGTGGCCTAAAGGGTGTTAGAAAGTTGTATCATCCTGCTTGTGTGGGCATGACCATCGAAGAAGCAAAGAAATTAGATCATTTTGTGTGTTCAGAATGTTCATCTGATGACGATATGAAGAAACCGCAAGCTACGTTTTCTGCATCGCCAGGAGCCGATGGCAAGGTGGAGCCCAAGCGGCGAAAGAGATGA | 714 | 0.5028 | MAKTRPGRKDLDSYTIRGTNKVVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWNHQLCDLTTCRMSGLKGVRKLYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFSASPGADGKVEPKRRKR | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun11g00708 | 237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 175 | IPR013083 | - | |
| Viun11g00708 | 237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 176 | 222 | IPR013083 | - | |
| Viun11g00708 | 237 | Pfam | BAH domain | 23 | 135 | IPR001025 | GO:0003682 | |
| Viun11g00708 | 237 | FunFam | Chromatin remodeling protein EBS | 1 | 132 | - | - | |
| Viun11g00708 | 237 | SMART | BAH_4 | 21 | 136 | IPR001025 | GO:0003682 | |
| Viun11g00708 | 237 | SUPERFAMILY | FYVE/PHD zinc finger | 132 | 168 | IPR011011 | - | |
| Viun11g00708 | 237 | ProSiteProfiles | BAH domain profile. | 21 | 136 | IPR001025 | GO:0003682 | |
| Viun11g00708 | 237 | MobiDBLite | consensus disorder prediction | 208 | 237 | - | - | |
| Viun11g00708 | 237 | Gene3D | - | 2 | 132 | IPR043151 | - | |
| Viun11g00708 | 237 | SUPERFAMILY | FYVE/PHD zinc finger | 183 | 211 | IPR011011 | - | |
| Viun11g00708 | 237 | CDD | BAH_BAHCC1 | 22 | 156 | - | - | |
| Viun11g00708 | 237 | PANTHER | OS08G0421900 PROTEIN | 1 | 228 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun11g00708 | Viun-Chr11 | 8884201 | 8887944 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun11g00708 | 31 | 132 | Core DNA Replication Machinery Family | AT4G14700 | 29.126 | 4.79e-10 | 57.4 |