Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00605 ATGAGAAGAGTGCCCCTTGCGCTACTCAAACGAGTTTATCCTCTGCGCAGCCAAAATGCACGACGCTCGTTCAGCACACTCCTCCCTCCGCCGCGCGAGGTGGTGGAACCCTTCTGCAACCTCTCCGACGTCGTTTCCTCCCCTCAAACCTCTCCGTGGCTCCCTCAAATCCTCTCCCTCCTCGATGGCTCTCCCTCCATGGAGTCCAACCTCGATTCCTTCTGCCGCCAATACCTCATCACTCTCTCCCCCTCCTTCGTCTCCCACACGCTCCGCTCCCTCTCCGACCATCTCACCGCCATGCGTTTCTTCTCCTGGGCCACCACGCAGCCCAAATACACCCACTCCCTCGACTGCCACGTCTCCCTCCTCCCCCTCCTTCCCCTCTCCTCCCTCCCCGCCGCCGTCGCCGCCCTCCGCCGCGCAAACCTCCCCATCACCCTCCCGGCCGCCCACTCCCTTGCCAAAACCCTCGCTGCCGCCGGCCTCCTCCACGATCTCCTCTGGCTGTTCCGCGCCATGACGGCCAACAACCTCCCTCTCTCCCTCATCAACCTCAACTCCCTCCTCAACGCCCTCGTCAACGCCTCCCTCGTCGACTCCGCCGAGCGCGTGTTAAAATCAATGCAGGAGGGGTCGTCGCCCAAGCCCGACGTCGTCAGTTACAACACGCTCGTCAAAGGCTACTGCAAGGTGGGGCGAACGCGGGATGCGTTCGCCACGCTCCGCGAAATGGAGGCTGAAAACGTGCCGCCCGATGAGGTCACGTACATGACCCTGATGCAGGCGTGTTACAACGAGGGTGACATGGATTCGTGCGTGAGGCTTTACCATGAGATGGAGGAGGATGAAACGTTGGTAACGAAAATCCCTTCTCACGCGTATAGTTTAACAATATGTGGGCTGTGTAAGCAGGGGAAGGTTGTGGAGGGTTGTTCTGTGTTTGAGAGTATGGTTAAGAAAGGTTGTGTGGCTCACAAGGCTGTGTATACTGCCATGATTGATGGTTATGCCAAGAGCGGGAACATGGATGCGGCGCTCTCGGTTTTGGAGAGGATGAAGGTGGATGGAGTTGAGCCTGATGAGGTTACATATGGTGCTGTTGTAGGTGGGTTGTGCAAGAGTGGGAAAGTGGAGGAGGCCATGGGTTATTTTAGGTTCTGCAAGGGTAATGGGGTGGGTGTGAATGCTGTGTTTTATTCGAGTTTGATTGATGGGCTTGGGAAGGTTGGGAGGGTGGATGAGGCGGAGAAGCTGTTTGAGGAAATGGCAGAAGAGGGGTGTCCACCGGATTCGTATTGTTACAATGCTCTGATGGATGGTTTGTGCAAGAGTGGGAGGGTTGATGAGGCTCTGATGCTGTTTAGGAGGATGGAGCAAGAGGGGTGTGAACAGACTGTTTATACTTTTACCATACTTATCAGTGAGCTCTTCAAGGAGAGGAGGAACGAGGAGGCGCTGAAGCTGTGGGAGGAGATGATTGACAAAGGTGTCACACCGAATGCTGCATGTTTCAGGGCTCTTTCAATGGGGCTGTGTCTTTCAGGGAAGGTTGCAAGGGCCTGCAGGGTGTTGGATGAGCTTGCTCCGATGGGGATTGTTCTGGAGAGAGCCTACGAGGACATGATTGGTGTGCTGTGCAAGGCTGGCCGTGTGAAGGAGGCCTGCAAGTTGGCTGATGGGATTGTAGATAGGGGTAGGGAAATACCAGGAAAGGTTAGGACTGTGCTGATCAATGCCTTGAGGAAGGCTGGTAATGCAGATTTGGCGATTAAGTTAATGCACAGCAAGATTGGTATTGGGTATGATCGAATGCGGAGTGTTAAAAAGAGAGTGAAGTTCCAAACCCTCGTCAACAACTGA 1863 0.5513 MRRVPLALLKRVYPLRSQNARRSFSTLLPPPREVVEPFCNLSDVVSSPQTSPWLPQILSLLDGSPSMESNLDSFCRQYLITLSPSFVSHTLRSLSDHLTAMRFFSWATTQPKYTHSLDCHVSLLPLLPLSSLPAAVAALRRANLPITLPAAHSLAKTLAAAGLLHDLLWLFRAMTANNLPLSLINLNSLLNALVNASLVDSAERVLKSMQEGSSPKPDVVSYNTLVKGYCKVGRTRDAFATLREMEAENVPPDEVTYMTLMQACYNEGDMDSCVRLYHEMEEDETLVTKIPSHAYSLTICGLCKQGKVVEGCSVFESMVKKGCVAHKAVYTAMIDGYAKSGNMDAALSVLERMKVDGVEPDEVTYGAVVGGLCKSGKVEEAMGYFRFCKGNGVGVNAVFYSSLIDGLGKVGRVDEAEKLFEEMAEEGCPPDSYCYNALMDGLCKSGRVDEALMLFRRMEQEGCEQTVYTFTILISELFKERRNEEALKLWEEMIDKGVTPNAACFRALSMGLCLSGKVARACRVLDELAPMGIVLERAYEDMIGVLCKAGRVKEACKLADGIVDRGREIPGKVRTVLINALRKAGNADLAIKLMHSKIGIGYDRMRSVKKRVKFQTLVNN 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00605 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Viun11g00605 620 Gene3D Tetratricopeptide repeat domain 289 409 IPR011990 GO:0005515
Viun11g00605 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Viun11g00605 620 Gene3D Tetratricopeptide repeat domain 413 536 IPR011990 GO:0005515
Viun11g00605 620 Gene3D Tetratricopeptide repeat domain 89 288 IPR011990 GO:0005515
Viun11g00605 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Viun11g00605 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Viun11g00605 620 SUPERFAMILY HCP-like 330 526 - -
Viun11g00605 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Viun11g00605 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Viun11g00605 620 Gene3D Tetratricopeptide repeat domain 537 597 IPR011990 GO:0005515
Viun11g00605 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Viun11g00605 620 Pfam PPR repeat 187 211 IPR002885 -
Viun11g00605 620 Pfam PPR repeat 542 563 IPR002885 -
Viun11g00605 620 Pfam PPR repeat 294 323 IPR002885 -
Viun11g00605 620 Pfam PPR repeat family 217 265 IPR002885 -
Viun11g00605 620 Pfam PPR repeat family 396 444 IPR002885 -
Viun11g00605 620 Pfam PPR repeat family 472 513 IPR002885 -
Viun11g00605 620 Pfam PPR repeat family 329 374 IPR002885 -
Viun11g00605 620 NCBIfam pentatricopeptide repeat 255 283 IPR002885 -
Viun11g00605 620 NCBIfam pentatricopeptide repeat 298 324 IPR002885 -
Viun11g00605 620 NCBIfam pentatricopeptide repeat 220 254 IPR002885 -
Viun11g00605 620 NCBIfam pentatricopeptide repeat 468 502 IPR002885 -
Viun11g00605 620 NCBIfam pentatricopeptide repeat 363 386 IPR002885 -
Viun11g00605 620 NCBIfam pentatricopeptide repeat 433 464 IPR002885 -
Viun11g00605 620 NCBIfam pentatricopeptide repeat 400 432 IPR002885 -
Viun11g00605 620 NCBIfam pentatricopeptide repeat 329 362 IPR002885 -
Viun11g00605 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Viun11g00605 620 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 293 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00605 Viun-Chr11 6629239 6632228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00605 156 602 Glycosyltransferase AT1G05670 28.099 1.08e-49 182