Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00493 ATGAATGTTTATGGGGTAACCTTGACTCAAAATTGTGTTCTTATGATCATAGTGTTGGTGATATTACCCTTCCTAGGGTTGCTTTTCTGGCTAGAAAACAAGTTATCCAATAACAACAGTTCCAGTGAGGAGAATGATTTGAAAGAACATGTGCAGATCAGTGATGACAGAAACAACTACATATTCTCTGAACACAGTGCTTGCTCCTTCTGTGGCAGATTAATAAGCAACACCACAGTTTCAACATGCTCACGCTGCAAAACTGCCATATATTGCTCAAAAACATGCAATTTTAAGCACTGGAGGCTTTTCCATAGATATGAATGTGTTGAGATTGAAGGGTCAGAAGATCAACAAGAATCACCTTCTCATGAATGTCTTATCATGGAAAAACACTCATCAAATGAAGTTGAAGAGAGAATATATGAAGAAGAAGGTGTTTACTGTATTGAAGGAGGAGAAAACAGTGATGAAAGATCATTGATGTGTGGAAATAATGGCATTGTGAATAATAATGAAGGGTGTGCAGTGTGTGGAAATCCAAGTTCTAAAGTGTGTTCAAGATGCAAAGCCATAAAATATTGCTCAAGAACATGCCAACATTTCGATTGGAGATCAGGGCATAAACTTCAATGTCTTGTTGAGATGGAAAATTCAAATCAGGTTGTAAATCATGCGAATTCATATGAAGTGGAAGATGATGTCCATTCATCTAGTCCTCTTTGCTTGGAGTTTTACTCAGCAGGAAACACGAGTTCTAGGGCCCTGATTCCAACTTCTTTGTCTCAGGAAGCAACCAAGAATCCCCAGAAGGAGGTTGAAGAACAATTGAGAAGCCTAAAAGAAGAATTGAAAAAGATCAAAGAAGAGAACAAATGGTTACGATCAGAGCGTGACGAATGGGAAGTGAGAACAAGGAATTCTATAGATAGACTTTACAGCTTCAGGAAAGAAAATGAACACCAGCTTTTCATTTTGAAGCATGAGAATGAATTGATGTCAAATGCTGAGAAGCAAGCCACTCAAATGGTTAACGGTTTATCTCAAAGGGTACACTGCTTGCAGATTGCAGTGGAAAGTGGAGTTAAAGAGAGGAAAAAACAAGAAGAATATATACATATGCTGCAGAAGGAATGTGCTAAGGTTAAGATAGAGCTACAAGAAGAAAAGAAAAATGTCAAAAAGCTTACATTAGAGTTTGAGAAGACTAAATTTCCTGTGAGAGTAACAGAAGACACAAGGCAGAAGTTAGTCAATGCTTCCACTGAAATTTCAACTGTTAAATCCAATGTTGCTGGTGCTGAGGTGTCGCAGCCAATTAGTTTAAGCAGAAACCTATCCTCTACAAGACAGGGTTGTTCGATTTGCCTAACCAATGAGAAGAACATGGCCTTTGGTTGTGGACACATGGTAAACTCAGAAAAACACTACCATTTTTCCATGTTTTATTTACATGCAATGATGGTTGGCAAATGGTTCAAATGCAGACATGTTTGGAGTGTGGATCAAAAATTCGCAAGTGCCATATATGTCGAATGA 1539 0.3808 MNVYGVTLTQNCVLMIIVLVILPFLGLLFWLENKLSNNNSSSEENDLKEHVQISDDRNNYIFSEHSACSFCGRLISNTTVSTCSRCKTAIYCSKTCNFKHWRLFHRYECVEIEGSEDQQESPSHECLIMEKHSSNEVEERIYEEEGVYCIEGGENSDERSLMCGNNGIVNNNEGCAVCGNPSSKVCSRCKAIKYCSRTCQHFDWRSGHKLQCLVEMENSNQVVNHANSYEVEDDVHSSSPLCLEFYSAGNTSSRALIPTSLSQEATKNPQKEVEEQLRSLKEELKKIKEENKWLRSERDEWEVRTRNSIDRLYSFRKENEHQLFILKHENELMSNAEKQATQMVNGLSQRVHCLQIAVESGVKERKKQEEYIHMLQKECAKVKIELQEEKKNVKKLTLEFEKTKFPVRVTEDTRQKLVNASTEISTVKSNVAGAEVSQPISLSRNLSSTRQGCSICLTNEKNMAFGCGHMVNSEKHYHFSMFYLHAMMVGKWFKCRHVWSVDQKFASAIYVE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00493 512 Coils Coil 372 399 - -
Viun11g00493 512 SUPERFAMILY HIT/MYND zinc finger-like 173 214 - -
Viun11g00493 512 Gene3D - 166 217 - -
Viun11g00493 512 PANTHER PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED 172 400 - -
Viun11g00493 512 SUPERFAMILY HIT/MYND zinc finger-like 64 111 - -
Viun11g00493 512 ProSiteProfiles Zinc finger MYND-type profile. 175 212 IPR002893 -
Viun11g00493 512 ProSitePatterns Zinc finger MYND-type signature. 175 212 IPR002893 -
Viun11g00493 512 Gene3D - 51 114 - -
Viun11g00493 512 ProSiteProfiles Zinc finger MYND-type profile. 68 109 IPR002893 -
Viun11g00493 512 Coils Coil 270 304 - -
Viun11g00493 512 Pfam MYND finger 68 109 IPR002893 -
Viun11g00493 512 Pfam MYND finger 175 212 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00493 Viun-Chr11 4755345 4762483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00493 171 212 Miscellaneous Gene Families AT4G31670 57.143 7.49e-10 59.7