Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00277 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATAGCACTGGCTGTTCCTGTTTTAGTTTCTAAAGCTCTAGAACTATTTTTGCAAGATCTTTGTGACCGTACTTATGAAATAACTCTTCAAAGAGGAGCAAAGACCATGAATTCATTGCATTTGAAACATTGTGTACAAAGCTATAATGTCTTTGACTTTCTGAGGGACGTTGTTAGCAGAGTTCCTGATTACGGTCATGGTCATGGCCATGCTGAGGCTGGTGCTGATGATCGGGCCATTTCAAAAAGAAGGAAAGCTGTCGGTGATGACTGTAATGATAGTGATGAAGAGGCTAAGAGGAGCAAGATGCAAGAGTTGAGCCACACTGGCACTACTGGCAGGGGAAGAGGCCGGGGCAGAGGAAGAGGCCGCGGCCGAGGGCGACCACCTTTAGTAAGAGACACATATCACCAGGATGCCGAATCTGAGCCTTGCACCTCTGTTCAGCCGAGCAACCATCAAAGTACAAACCCAATTGTTGCAGTGGACAGTGGTTCTGAGTCAAAAGATATACCAAAGGAGGAGAATGTTGCAATTCCTGTTGTAAGCACTGATTCACTCCGGAACATTGACCTGAATGCCATTACGAATGAAAATGATGACAAAAAAGCTAGTGTGGCAGCTGATACCTCATTGCCGGAACCTCCTTCAACAGAGGGCAAGCATGAAGAGATTCTGGGGTGGCCCCTTCCTGATGTGGACAAGATGGCCATTGATTCAACACAGCTTGCACAGCTGGGTAGGCCACTAGAAGAGGAGGAGGAAGATTATGACGAGGAGGAGGGGTAA 867 0.4694 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHGHGHAEAGADDRAISKRRKAVGDDCNDSDEEAKRSKMQELSHTGTTGRGRGRGRGRGRGRGRPPLVRDTYHQDAESEPCTSVQPSNHQSTNPIVAVDSGSESKDIPKEENVAIPVVSTDSLRNIDLNAITNENDDKKASVAADTSLPEPPSTEGKHEEILGWPLPDVDKMAIDSTQLAQLGRPLEEEEEDYDEEEG 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00277 288 MobiDBLite consensus disorder prediction 91 197 - -
Viun11g00277 288 MobiDBLite consensus disorder prediction 167 189 - -
Viun11g00277 288 FunFam dr1-associated corepressor homolog 1 86 - -
Viun11g00277 288 MobiDBLite consensus disorder prediction 225 288 - -
Viun11g00277 288 MobiDBLite consensus disorder prediction 91 130 - -
Viun11g00277 288 SUPERFAMILY Histone-fold 4 96 IPR009072 GO:0046982
Viun11g00277 288 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Viun11g00277 288 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Viun11g00277 288 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00277 Viun-Chr11 2352470 2357326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g00277 1 274 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.845 2.16e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Viun11g00277 CBFD_NFYB_HMF 2.1e-19 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g00277 11 2352470 2357326 Viun11g00277 11 2352470 2357326 ECH